SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37750 | AT | Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr4:17739782-17742189 FORWARD LENGTH=555 | SoyBase | E_val: 7.00E-138 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gamete generation | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of shoot apical meristem identity | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0042127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR11795 | Panther | PROTEIN KINASE | JGI | ISS | |
| PTHR11795:SF332 | Panther | JGI | ISS | ||
| PF00847 | PFAM | AP2 domain | JGI | ISS | |
| UniRef100_G7JF92 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AP2-like ethylene-responsive transcription factor ANT n=1 Tax=Medicago truncatula RepID=G7JF92_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CE54 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CE54 related cluster n=1 Tax=unknown RepID=UPI000233CE54 | SoyBase | E_val: 0 | ISS |
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Glyma11g04910 not represented in the dataset |
Glyma11g04910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g40380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g045800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g04910.3 sequence type=transcript gene model=Glyma11g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTTGACACACCTATTTATACACACACAAAAACACATCTACTTGTTGGATAGGATTTTTAGATTTGGCCTTCTTCAACCAACAAAAAAATACGTTCATATTTAACAAAACAAATATTGGTTCCAAGGGGAGGAAAGGCTAGAGTGTAGATACATATATGGAATTATTACTTAGTAGTTTATCTGTTTTCCAATGATTGAGTTGTCTTGCCTTATATTTGGCTAGTATTTCTGTTAACAAGTGAAGTTAAGTAGTGCTCTAGTACTGAGTCTTCAAGATGAAGCCTATAGAAAATGGCAATACCGTTAACATCAACTATCAAAATAGCTGGTTAGGCTTCTCCCTCTCCCCACAAATGATCAATATAGGTGTTCCTTCACACCTTCATCAGACACAGCCTTCACCCGCAGCTGTTGAAACTGTTCCACCAAGCTTTTATCATCATACACCTCTCCATAGCTATGGCTCTTACTATGGACTGGAAGGTGAACACGTTGGATTGAGTTCATCCTTGCCTATCATGCCCCTTAAATCCAATGTCTCTCTCTCTGGAATAGAAGCTCTGAGTAGATCACAAGCACAAGCAACGATAACTACTTCAGCAATGCATCCAAGGTTAAATAATATGCTTTACAACCAGCTCTTATGCCATGGACTAAACAATCCAAACAACTTAAATCACATTCAAGAGAATATCAGCCAGCAACAATTCTCGTATTACTCTACCTTAAGAAACCATGATATGATTTTAGAAGGTTCCAAGCACCAGCTCCCATGTATAGCTGAAGATGAAAATCCGGGTTTGAAGAGTTGGTTCTCAAGGGACTTCCCTGCTAGACATGGAGAAGAATCAAGGATGATTGTTCCTTTGGAGGACAATAATGGAGGCGAATCTGGATCCATTGGATCAATAACATATGGGGATTTGCATTCATTGAATTTGTCTGTGAGTCCTACCTCAGGATCAAGCTGTGTTACAAGTTCACCTGCTATCACTAATACTGTTGCCACTGATACCAAGAAAAGGGGGCTTCAAATGGTGGACCAGAATCAGAAGCAAATAGGTCATAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATACGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCCCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTAGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGGGCCTCCATGTACAGAGGAGTAACAAGGCACCACCAACACGGAAGGTGGCAAGCTCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATTAAATTCAGAGGAGTTAATGCTGTTACAAACTTTGATATAACAAGATATGACGTGGAAAGAATTATGGAGAGCAATAACCTTCTTAGTAGTGAACAAGCTAAGCGGAAAAGAGAGATGGATGATGGAACTAGAAGCGAGGCTACAGTTAACCAAAAACCTTGTACTACTCAAGAAACCGTTCTGATGCAGAAAAGATGCAGAAGCCAATCAGAATGGAAGATGGTTCAGTATCCATCCTCCCAACAGCTTGATCAGAATCCACAAAGAATTGAGTGTAGTAGAACTGAGTCCTTGTCAACTGCTTTAGATAACATGTTTCATCACCAAGTTGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCCAAATTATTGGCTGACGTGGATTCTTTGGATCTATCTTCCAATCTCAGGCCTTCGCTTTCTATTCCTCAGATGCCAATTTTTGCTGCTTGGACCGATGCATAATCCTATGTTTTTTTACCTCCATCAAAATGGCAAAAGCTTGTTTTGAATGCTTGTTTACTAAACCAGGGTGTGAATTTCCAGCTAGTACAATAGGGAGCTTGTGCCCATGTTTAAAATGTTAACTGTTACATTAAACATTTTCCTCGTACGATGAGAGGAAAACTCCTAAAGTTTAGTGTATCGCTTAGCACTCCAAATTCGCATCATCAATTTTTCGGTGTTAGAATCTTATCTAAAGGTTATTTTGAACCTTAACTAATTCTAATCATGTTTAATTAGTGTC
>Glyma11g04910.2 sequence type=CDS gene model=Glyma11g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCCTATAGAAAATGGCAATACCGTTAACATCAACTATCAAAATAGCTGGTTAGGCTTCTCCCTCTCCCCACAAATGATCAATATAGGTGTTCCTTCACACCTTCATCAGACACAGCCTTCACCCGCAGCTGTTGAAACTGTTCCACCAAGCTTTTATCATCATACACCTCTCCATAGCTATGGCTCTTACTATGGACTGGAAGGTGAACACGTTGGATTGAGTTCATCCTTGCCTATCATGCCCCTTAAATCCAATGTCTCTCTCTCTGGAATAGAAGCTCTGAGTAGATCACAAGCACAAGCAACGATAACTACTTCAGCAATGCATCCAAGGTTAAATAATATGCTTTACAACCAGCTCTTATGCCATGGACTAAACAATCCAAACAACTTAAATCACATTCAAGAGAATATCAGCCAGCAACAATTCTCGTATTACTCTACCTTAAGAAACCATGATATGATTTTAGAAGGTTCCAAGCACCAGCTCCCATGTATAGCTGAAGATGAAAATCCGGGTTTGAAGAGTTGGTTCTCAAGGGACTTCCCTGCTAGACATGGAGAAGAATCAAGGATGATTGTTCCTTTGGAGGACAATAATGGAGGCGAATCTGGATCCATTGGATCAATAACATATGGGGATTTGCATTCATTGAATTTGTCTGTGAGTCCTACCTCAGGATCAAGCTGTGTTACAAGTTCACCTGCTATCACTAATACTGTTGCCACTGATACCAAGAAAAGGGGGCTTCAAATGGTGGACCAGAATCAGAAGCAAATAGGTCATAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATACGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCCCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTAGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGGGCCTCCATGTACAGAGGAGTAACAAGGTCTCACAGGCTAGCATTTACACAGCACCACCAACACGGAAGGTGGCAAGCTCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATTAAATTCAGAGGAGTTAATGCTGTTACAAACTTTGATATAACAAGATATGACGTGGAAAGAATTATGGAGAGCAATAACCTTCTTAGTAGTGAACAAGCTAAGCGGAAAAGAGAGATGGATGATGGAACTAGAAGCGAGGCTACAGTTAACCAAAAACCTTGTACTACTCAAGAAACCGTTCTGATGCAGAAAAGATGCAGAAGCCAATCAGAATGGAAGATGGTTCAGTATCCATCCTCCCAACAGCTTGATCAGAATCCACAAAGAATTGAGTGTAGTAGAACTGAGTCCTTGTCAACTGCTTTAGATAACATGTTTCATCACCAAGTTGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCCAAATTATTGGCTGACGTGGATTCTTTGGATCTATCTTCCAATCTCAGGCCTTCGCTTTCTATTCCTCAGATGCCAATTTTTGCTGCTTGGACCGATGCATAA >Glyma11g04910.3 sequence type=CDS gene model=Glyma11g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCCTATAGAAAATGGCAATACCGTTAACATCAACTATCAAAATAGCTGGTTAGGCTTCTCCCTCTCCCCACAAATGATCAATATAGGTGTTCCTTCACACCTTCATCAGACACAGCCTTCACCCGCAGCTGTTGAAACTGTTCCACCAAGCTTTTATCATCATACACCTCTCCATAGCTATGGCTCTTACTATGGACTGGAAGGTGAACACGTTGGATTGAGTTCATCCTTGCCTATCATGCCCCTTAAATCCAATGTCTCTCTCTCTGGAATAGAAGCTCTGAGTAGATCACAAGCACAAGCAACGATAACTACTTCAGCAATGCATCCAAGGTTAAATAATATGCTTTACAACCAGCTCTTATGCCATGGACTAAACAATCCAAACAACTTAAATCACATTCAAGAGAATATCAGCCAGCAACAATTCTCGTATTACTCTACCTTAAGAAACCATGATATGATTTTAGAAGGTTCCAAGCACCAGCTCCCATGTATAGCTGAAGATGAAAATCCGGGTTTGAAGAGTTGGTTCTCAAGGGACTTCCCTGCTAGACATGGAGAAGAATCAAGGATGATTGTTCCTTTGGAGGACAATAATGGAGGCGAATCTGGATCCATTGGATCAATAACATATGGGGATTTGCATTCATTGAATTTGTCTGTGAGTCCTACCTCAGGATCAAGCTGTGTTACAAGTTCACCTGCTATCACTAATACTGTTGCCACTGATACCAAGAAAAGGGGGCTTCAAATGGTGGACCAGAATCAGAAGCAAATAGGTCATAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATACGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCCCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTAGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGGGCCTCCATGTACAGAGGAGTAACAAGGCACCACCAACACGGAAGGTGGCAAGCTCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATTAAATTCAGAGGAGTTAATGCTGTTACAAACTTTGATATAACAAGATATGACGTGGAAAGAATTATGGAGAGCAATAACCTTCTTAGTAGTGAACAAGCTAAGCGGAAAAGAGAGATGGATGATGGAACTAGAAGCGAGGCTACAGTTAACCAAAAACCTTGTACTACTCAAGAAACCGTTCTGATGCAGAAAAGATGCAGAAGCCAATCAGAATGGAAGATGGTTCAGTATCCATCCTCCCAACAGCTTGATCAGAATCCACAAAGAATTGAGTGTAGTAGAACTGAGTCCTTGTCAACTGCTTTAGATAACATGTTTCATCACCAAGTTGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCCAAATTATTGGCTGACGTGGATTCTTTGGATCTATCTTCCAATCTCAGGCCTTCGCTTTCTATTCCTCAGATGCCAATTTTTGCTGCTTGGACCGATGCATAA
>Glyma11g04910.2 sequence type=predicted peptide gene model=Glyma11g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPIENGNTVNINYQNSWLGFSLSPQMINIGVPSHLHQTQPSPAAVETVPPSFYHHTPLHSYGSYYGLEGEHVGLSSSLPIMPLKSNVSLSGIEALSRSQAQATITTSAMHPRLNNMLYNQLLCHGLNNPNNLNHIQENISQQQFSYYSTLRNHDMILEGSKHQLPCIAEDENPGLKSWFSRDFPARHGEESRMIVPLEDNNGGESGSIGSITYGDLHSLNLSVSPTSGSSCVTSSPAITNTVATDTKKRGLQMVDQNQKQIGHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRSHRLAFTQHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVERIMESNNLLSSEQAKRKREMDDGTRSEATVNQKPCTTQETVLMQKRCRSQSEWKMVQYPSSQQLDQNPQRIECSRTESLSTALDNMFHHQVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLLADVDSLDLSSNLRPSLSIPQMPIFAAWTDA* >Glyma11g04910.3 sequence type=predicted peptide gene model=Glyma11g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPIENGNTVNINYQNSWLGFSLSPQMINIGVPSHLHQTQPSPAAVETVPPSFYHHTPLHSYGSYYGLEGEHVGLSSSLPIMPLKSNVSLSGIEALSRSQAQATITTSAMHPRLNNMLYNQLLCHGLNNPNNLNHIQENISQQQFSYYSTLRNHDMILEGSKHQLPCIAEDENPGLKSWFSRDFPARHGEESRMIVPLEDNNGGESGSIGSITYGDLHSLNLSVSPTSGSSCVTSSPAITNTVATDTKKRGLQMVDQNQKQIGHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVERIMESNNLLSSEQAKRKREMDDGTRSEATVNQKPCTTQETVLMQKRCRSQSEWKMVQYPSSQQLDQNPQRIECSRTESLSTALDNMFHHQVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLLADVDSLDLSSNLRPSLSIPQMPIFAAWTDA*
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