Glyma11g04855 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g04855

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3329828
stop:	3333608
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04855

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65770	AT	Annotation by Michelle Graham. TAIR10: little nuclei4 \| chr5:26311587-26315610 FORWARD LENGTH=1010	SoyBase	E_val: 1.00E-131	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_B9SX77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Filamin-A-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9SX77_RICCO	SoyBase	E_val: 9.00E-147	ISS
UniRef100_I1LH35	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH35_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04855

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04855 not represented in the dataset	Glyma11g04855 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04855

Paralog	Evidence	Comments
Glyma01g40430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04855 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g045200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04855

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g04855

Limit To All Plant Sequences

>Glyma11g04855.1   sequence type=CDS   gene model=Glyma11g04855   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACTCCTATAACTCCTGATTCCGCAACACTTGCTTCGAGAGATCCATGGAAGCGTCTTAAACAACCTGCCTTCGATGATAATTCCATTCAGCGCAAAGATAAGCTTGAGAAGGCCTTGCATGAGATGCGTACTGAATGTGCTGAAACAAAGGTTTCAGCTGAGAGTAAAGTTTCTGAAGCACACCAATTGATAGATGAAGCGCAGAAAAAATCTACTGAGGCTGAGGCAAAGCTGCGTGCTGCGGAATCCTTTCAGGCAGAAGCTTGTGGATATTATAGTGTTGCAGACAGGAAGCTTCGGGATGTTGAAGCTCGTGAAGATGAACTCAGGCGGCAAATCAAATCTTTCAAATCAGAGTATGTGTTTGCACTAAGTAAACGGGAATCTGAGCTGAACAAGAAAGAACAGGAATTGCTTGATTTGCAAGTGAAACTTGCTAGTCGAGAATCTGATGAAACTCAGAAAGTTAAAGCTGTTCAGGAAGCTGAACTTGGAGCAAGAAAGACTAATTTTGAAGCTGAACTACAAATTCAGCTCAAATTGGTTGAGAATGAAATTGAGATGAAGAGATGGGCTTGGGAATTGAAGGAAGTAGATCTTACACAACGAGAGGAGAAACTCCAGGAAAGGGAGCATGAGTTGGAAATTCTGTCAAGGACACTGGGTGAGAAGGAGAAGGATTTGGTGGATATGTCAAGTGCGCTTAAAGAAAAAGATCAAAGCCTGAGAGCTTCTGAAAAGGAATTAGAGTTAAATAAAGTTCTTTTGCAAAAGGATAAAGAAGAGATAAACAAAACAAAGTTAGATGTACAGATGTCTTTGGTTTCATTGGAAAATAATTTAAGGCAATTTGACAATGCGAAGGAGAGACACGAAGCCTTGAAAAGTGAAACAAATGACTTGTCAGTTTTGGAAGTGAAACTAAAGGAAGAAATTGATGTTGTACGATCTCAAAAGTTGGAGATAGTAGCGGAGGCAGATAAGCTGGAAGCAGAGAAAGCAAAGTTTGAAGCTCAGTGGGAGCTTCTTGATGAAAAGAAAGAAGAGCTGCGGAAAGAAGCAGAATACATAGCAGAGGAAAAAAAGGCAGTTTCGGCTTTCATTAAGAAGGAGCGTGACAAGCTAAGACAAGAGAAAGAGAATATGCGTGATCAGTACAAACGAGACTTGGAGTCGCTAACCTGTGAACGAGAAGAGTTCATGAACAAGATGGCACATGAACATGATGACTGGTTTGGCAAGATGCAGCAAGAGCGTGCAAATTTCTTGAGGGACGTTGAGATGCAGAACAGGAATATGAATATCCTTATTGACAAGAGGCGTGAAGAAATAGAAAGTTATTTGAAGGAAAGAGAAAAATCTTTTGAAGAAGAAAAGAACAATCAACTAGAATATATTAATGCTCTTAAGGAAAAAGTAGCAAAAGAGTACAAACAGGTTTCCTTTGAAATGAGAAGACTTGAAGTTGAACGACCAGAGATAAGTTCGGACTGCGAACAGAGAAATAAGGATAAGCTCCAAAATCAGAGAGAACTGTTGCATGCTGATAGAATTGAAATTCATGCTCAGACTGAAGAATTGAAAAAAGTGAAGGATCTTAAAATTGTCTCTGATGATATTGCTCTGACCGAATTGCTTAATTCTGATATGGAGTCTAACCAACAAAAAATCTCTATGAAGAAAAAATTGAACCAGCGGACTCTTAAGCATGATGATCATTTAAATTCCCCCCAAAAAATAGATGCTAATAAGATTAGCAATGGGTTTGATTCTTCATTTGTGCAAAACTCATCTGTTGTTCTTCCTTCTAGCCCTGTTCGATTCTCATGGATCAAACGATGCACAAAACTAGTTTTTAGGCGTTCCCCTGAGAAGTCACTCGTTCATGATGATGACAAAGGTTGTGGATAG

Predicted protein sequences of Glyma11g04855

Limit To All Plant Sequences

>Glyma11g04855.1   sequence type=predicted peptide   gene model=Glyma11g04855   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPITPDSATLASRDPWKRLKQPAFDDNSIQRKDKLEKALHEMRTECAETKVSAESKVSEAHQLIDEAQKKSTEAEAKLRAAESFQAEACGYYSVADRKLRDVEAREDELRRQIKSFKSEYVFALSKRESELNKKEQELLDLQVKLASRESDETQKVKAVQEAELGARKTNFEAELQIQLKLVENEIEMKRWAWELKEVDLTQREEKLQEREHELEILSRTLGEKEKDLVDMSSALKEKDQSLRASEKELELNKVLLQKDKEEINKTKLDVQMSLVSLENNLRQFDNAKERHEALKSETNDLSVLEVKLKEEIDVVRSQKLEIVAEADKLEAEKAKFEAQWELLDEKKEELRKEAEYIAEEKKAVSAFIKKERDKLRQEKENMRDQYKRDLESLTCEREEFMNKMAHEHDDWFGKMQQERANFLRDVEMQNRNMNILIDKRREEIESYLKEREKSFEEEKNNQLEYINALKEKVAKEYKQVSFEMRRLEVERPEISSDCEQRNKDKLQNQRELLHADRIEIHAQTEELKKVKDLKIVSDDIALTELLNSDMESNQQKISMKKKLNQRTLKHDDHLNSPQKIDANKISNGFDSSFVQNSSVVLPSSPVRFSWIKRCTKLVFRRSPEKSLVHDDDKGCG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain