Report for Sequence Feature Glyma11g04831
Feature Type: gene_model
Chromosome: Gm11
Start: 3311485
stop: 3312797
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g04831
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
UniRef100_E9L562 UniRef
Annotation by Michelle Graham. Best UniRef hit: CLE16 protein n=1 Tax=Glycine max RepID=E9L562_SOYBN
SoyBase E_val: 3.00E-39 ISS
UniRef100_E9L562 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: CLE16 protein n=1 Tax=Glycine max RepID=E9L562_SOYBN
SoyBase E_val: 3.00E-39 ISS
Expression Patterns of Glyma11g04831
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g04831
Paralog Evidence Comments
Glyma01g40455 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g04831 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g045000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g04831
Transcripts of Glyma11g04831
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g04831.2 sequence type=transcript gene model=Glyma11g04831 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAACAAATAGAAAAAATCAAGTGGTTACAAAAAAAGCAGGTGCGAGTGATCATATTATAAGACATCATAGTGTCCTCCCTCCAAAAAGAAGAGAAGAAAACAAATAGAAAGTATCAAAACTCTTGTCATGCTGGACAAGCTCTCTCCCTGGCGTGTGATTCAGAGGCTTTCTCTTAAAAAGGTTGCTCCGAACTTCCAAGATGCCCATCACTAGCATTATTCATATAAGATATTGGGGATTGCCATTTGGGGCTGCATGCCTTCACTCAAGTACCATTTGACTGTAATCACAAGCTGCAACGTCAAGGTTTTTGGAGGTGTGGCCGCATCAGCTGTATTTATCTGCAATTTCTCACTGTACCAAAAAACGCAACGAAACAACAACTGCCACCACTGTGACCTCAATTTAAAACCAAAAAAGTAAGTGGTTCGCATATTGTAATGCTAAGGAGTGACATGGGTGCTCTTTCTGTGCTGCTGGTTCTACTGATATTCTGCAATTCTGGGATTCTTGGTATAGCTGGAGGTTTGTTGAATTTCACAAGGTATGCTATACCACGTAAGAATATCTCTGGCAATGGCAAAGCAGAGTTGGAAGACAAGAGAGGCGTGCCATCAGGAGCTAATCCTCTGCATAATCGGTAGAGTAGAGAGGACATGGTGGTATTTGGGACCACACAGAAAGTGATGATCACAGAGTATTAGTTTTAGGAATTAGGACCTCTCAAAGGGGCTAAAGGAATCTGCTATTCCTTTTGTTCCTGTTTGGATGTTATTGTTATCTGAAACATGGAAAAGTATCAAAGCATATAACAATTGCCTAAAATATTGATTCTTTTTCTGTGCTCATCTGACATGTTTATACATGAGCTGTCTCTTGGTTTAGTAACACCTAATGGATGTCTTGCTTGCATGCCTATTATAATTAATTGTTTTTTTTATTTTAACTGCTTCTTATATCTCTTTCCGATGTGCCATAGCTGATAGTAATTTTGTTTGATTAACCGTGTCAATTATTCAGTTATCA
Coding sequences of Glyma11g04831
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g04831.1 sequence type=CDS gene model=Glyma11g04831 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTAAGGAGTGACATGGGTGCTCTTTCTGTGCTGCTGGTTCTACTGATATTCTGCAATTCTGGGATTCTTGGTATAGCTGGAGGTTTGTTGAATTTCACAAGGTATGCTATACCACGTAAGAATATCTCTGGCAATGGCAAAGCAGAGTTGGAAGACAAGAGAGGCGTGCCATCAGGAGCTAATCCTCTGCATAATCGGTAG
>Glyma11g04831.2 sequence type=CDS gene model=Glyma11g04831 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTAAGGAGTGACATGGGTGCTCTTTCTGTGCTGCTGGTTCTACTGATATTCTGCAATTCTGGGATTCTTGGTATAGCTGGAGGTTTGTTGAATTTCACAAGGTATGCTATACCACGTAAGAATATCTCTGGCAATGGCAAAGCAGAGTTGGAAGACAAGAGAGGCGTGCCATCAGGAGCTAATCCTCTGCATAATCGGTAG
Predicted protein sequences of Glyma11g04831
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g04831.1 sequence type=predicted peptide gene model=Glyma11g04831 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLRSDMGALSVLLVLLIFCNSGILGIAGGLLNFTRYAIPRKNISGNGKAELEDKRGVPSGANPLHNR*
>Glyma11g04831.2 sequence type=predicted peptide gene model=Glyma11g04831 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLRSDMGALSVLLVLLIFCNSGILGIAGGLLNFTRYAIPRKNISGNGKAELEDKRGVPSGANPLHNR*