Glyma11g04787 - SoyBase

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Report for Sequence Feature Glyma11g04787

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3281420
stop:	3284766
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04787

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22795	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 799854 Blast hits to 188815 proteins in 4452 species: Archae - 4529; Bacteria - 144236; Metazoa - 287749; Fungi - 87083; Plants - 43826; Viruses - 3662; Other Eukaryotes - 228769 (source: NCBI BLink). \| chr2:9697380-9699584 REVERSE LENGTH=734	SoyBase	E_val: 2.00E-15	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9T179	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9T179_RICCO	SoyBase	E_val: 3.00E-19	ISS
UniRef100_I1LH29	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH29_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04787

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04787 not represented in the dataset	Glyma11g04787 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04787

Paralog	Evidence	Comments
Glyma01g40520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04787 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g044500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04787

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g04787

Limit To All Plant Sequences

>Glyma11g04787.2   sequence type=transcript   gene model=Glyma11g04787   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGTCGTTTTACCTTTTCTCCACTTGACTTATTTCTAAGTAATTGTGAAATGATAAAGATGAACCAGCAGTTTGTGTCTCTATAATCTGTGCACTAGTAGCGTACTATAAATATGTCTCTCAGATGCCATTGCCATTTGTAGTTTTGGCATAAAAAGTTGTTCTCTACATCTAACTTCTGGTTAGTTGGTACGAAGCGAGGGCGCTATCACATCCTAAATCGTTCAAGTCCCAGAAATACCAGCTCCATAACCCAGTTTCTTCTTGGGAAAAAGGTAAAATTTTGAGGCTCAATAAGGAACATTCGACATGTTCAGGTCATCTCAGCAGAGGAATTCGAGATGCAAAGACTTCAAGGTGAAACATGCTCTTCAAATATGTGTTCTTCTTGGCGTTTGTATCTGGATGGCTTATCTAGTTCAGCATTCTCGTGAGAAAAAAAGATCCTATGGTGAAGGGACAAATGCTGACAGTGAGGTTGTGAAGTTAGGGAGGAAAGACCCCGATCCTAATGTGGAGCAATCTTCTTCTATCTTACATGCAAGGGACAAGGAGGAAAAGGATGAAGAAGAAAACAACCATGAAAAGCAAAAGAAGACAGATGACGTTAATCGTGTGGAAAATGAGATCCAGACACAAAAGAATGAGCAGAATAACAATGAAGAGAAATCTGAGCAGAGAAAGGATCCAGTAGATCAAGACACTGAAGAGAATGAGCATAAGGCAAACAAGGAGAGTGATAGTGTGATAAAGGAGAATGAAGACAACAAAAATAAGGTGGAGGAGGACAATCAAAGTAGAGGGATTAGTGAGGAAAAAAACGAGACAAAAAAAGAAGAGACAGATAAAGAGGAGGATGAAGAGATAAACCAAAACAGAACTGAAGCAAGGGAACGTATGGAGGAAGATCACAAGCAAGAAGATGAAGAGGAGAGCAATGCAACAGACAATGAGAGAGAAGAGAATGACCATATTCAGGAAGTGGATTCACCTGAAGATCGAGTTCGGGATCAAAACAGCGAAAGGAACAATGAGGAGGCAAAAGAGGAATATTATGCCTCCAGTGAAGGTTTGAACAAGACAAAACAATCTGACAAGAGAGAAAACAATGAATTTGAGTTGGAGTCTCAAACAAATGGTACCGAAGTGGCTCATGTTCATGAGAATGAGAGGGTCTTAAATGTAACACAACGAAAAGCTACACAAGTGACTAATTCTGTTGTCACAAATATAACCAACCAAGGAAATGGTAGTGAGAATCAAGCTGAGAAAAAGAATGATTCACAAAAGAGTTCTATTGCCGAGTCAGATAAGCAGGAGCGAGAGCCTAATAAGCCCTCTAGTGATGATGTAGAAGCTCTTCACTCACAGAATGGTACAGATACAACTGAAAAACAACTTGAAACACCTGAAAACTCCAAGGTAGAGGACTCCATTTTGCACAATTCAACGTTGACAATGAAGGATCTTAAGTCAGATGCTGCAGTGGAACAAGTTGATTCCATCTTAACAAATTCATCAGGAGCTCATGAGAGAAACGTGACTAATGGAGAATATAATGGCAAAGCAAATGCTAATGGCAATAGTCATGATGGGTCAGGCAGTGCTTCTGATTCTTCTATTGTTGAAGGAAAAGATGCATCCTCGAGGAATAATGGTGACGCCGGGCAGGTTGAGAATGAGAACATTGATACAAGTAAAAATGAAGATAGAGCTCAAAATGAACCGGTTGAATCATCAATAAAGAAAGAAGAATCCGCACATTGATTATAGATGGTCATAACAATCCTAAATGGAATTATCAAGACAGGTTTTAATTCTACAAATCATTTGGATTTGAAATAGTTTTAGGATCTTGGTCAAGAACAAATACAACAATCATTCACAATGGTGTTGTTGCCACGGAGTGATACTGATAATTCAAATAAATCAGTTGTACCCTGCTTCTTCAAGTTACCACTATGTATCAAAGTTTTGTTTACTCTTGCAGAAGTGTAGCGTTTTTTGGCTTCTTACAACTTGCTAGACCAAGATTATCCGATAATTACATCATATATGATATTTTTTTTTTATTGACATTAGTTGATAATTTTGTTAGAAT

Coding sequences of Glyma11g04787

Limit To All Plant Sequences

>Glyma11g04787.1   sequence type=CDS   gene model=Glyma11g04787   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAGGTCATCTCAGCAGAGGAATTCGAGATGCAAAGACTTCAAGGTGAAACATGCTCTTCAAATATGTGTTCTTCTTGGCGTTTGTATCTGGATGGCTTATCTAGTTCAGCATTCTCGTGAGAAAAAAAGATCCTATGGTGAAGGGACAAATGCTGACAGTGAGGTTGTGAAGTTAGGGAGGAAAGACCCCGATCCTAATGTGGAGCAATCTTCTTCTATCTTACATGCAAGGGACAAGGAGGAAAAGGATGAAGAAGAAAACAACCATGAAAAGCAAAAGAAGACAGATGACGTTAATCGTGTGGAAAATGAGATCCAGACACAAAAGAATGAGCAGAATAACAATGAAGAGAAATCTGAGCAGAGAAAGGATCCAGTAGATCAAGACACTGAAGAGAATGAGCATAAGGCAAACAAGGAGAGTGATAGTGTGATAAAGGAGAATGAAGACAACAAAAATAAGGTGGAGGAGGACAATCAAAGTAGAGGGATTAGTGAGGAAAAAAACGAGACAAAAAAAGAAGAGACAGATAAAGAGGAGGATGAAGAGATAAACCAAAACAGAACTGAAGCAAGGGAACGTATGGAGGAAGATCACAAGCAAGAAGATGAAGAGGAGAGCAATGCAACAGACAATGAGAGAGAAGAGAATGACCATATTCAGGAAGTGGATTCACCTGAAGATCGAGTTCGGGATCAAAACAGCGAAAGGAACAATGAGGAGGCAAAAGAGGAATATTATGCCTCCAGTGAAGGTTTGAACAAGACAAAACAATCTGACAAGAGAGAAAACAATGAATTTGAGTTGGAGTCTCAAACAAATGGTACCGAAGTGGCTCATGTTCATGAGAATGAGAGGGTCTTAAATGTAACACAACGAAAAGCTACACAAGTGACTAATTCTGTTGTCACAAATATAACCAACCAAGGAAATGGTAGTGAGAATCAAGCTGAGAAAAAGAATGATTCACAAAAGAGTTCTATTGCCGAGTCAGATAAGCAGGAGCGAGAGCCTAATAAGCCCTCTAGTGATGATGTAGAAGCTCTTCACTCACAGAATGGTACAGATACAACTGAAAAACAACTTGAAACACCTGAAAACTCCAAGGTAGAGGACTCCATTTTGCACAATTCAACGTTGACAATGAAGGATCTTAAGTCAGATGCTGCAGTGGAACAAGTTGATTCCATCTTAACAAATTCATCAGGAGCTCATGAGAGAAACGTGACTAATGGAGAATATAATGGCAAAGCAAATGCTAATGGCAATAGTCATGATGGGTCAGGCAGTGCTTCTGATTCTTCTATTGTTGAAGGAAAAGATGCATCCTCGAGGAATAATGGTGACGCCGGGCAGGTTGAGAATGAGAACATTGATACAAGTAAAAATGAAGATAGAGCTCAAAATGAACCGGTTGAATCATCAATAAAGAAAGAAGAATCCGCACATTGA

>Glyma11g04787.2   sequence type=CDS   gene model=Glyma11g04787   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAGGTCATCTCAGCAGAGGAATTCGAGATGCAAAGACTTCAAGGTGAAACATGCTCTTCAAATATGTGTTCTTCTTGGCGTTTGTATCTGGATGGCTTATCTAGTTCAGCATTCTCGTGAGAAAAAAAGATCCTATGGTGAAGGGACAAATGCTGACAGTGAGGTTGTGAAGTTAGGGAGGAAAGACCCCGATCCTAATGTGGAGCAATCTTCTTCTATCTTACATGCAAGGGACAAGGAGGAAAAGGATGAAGAAGAAAACAACCATGAAAAGCAAAAGAAGACAGATGACGTTAATCGTGTGGAAAATGAGATCCAGACACAAAAGAATGAGCAGAATAACAATGAAGAGAAATCTGAGCAGAGAAAGGATCCAGTAGATCAAGACACTGAAGAGAATGAGCATAAGGCAAACAAGGAGAGTGATAGTGTGATAAAGGAGAATGAAGACAACAAAAATAAGGTGGAGGAGGACAATCAAAGTAGAGGGATTAGTGAGGAAAAAAACGAGACAAAAAAAGAAGAGACAGATAAAGAGGAGGATGAAGAGATAAACCAAAACAGAACTGAAGCAAGGGAACGTATGGAGGAAGATCACAAGCAAGAAGATGAAGAGGAGAGCAATGCAACAGACAATGAGAGAGAAGAGAATGACCATATTCAGGAAGTGGATTCACCTGAAGATCGAGTTCGGGATCAAAACAGCGAAAGGAACAATGAGGAGGCAAAAGAGGAATATTATGCCTCCAGTGAAGGTTTGAACAAGACAAAACAATCTGACAAGAGAGAAAACAATGAATTTGAGTTGGAGTCTCAAACAAATGGTACCGAAGTGGCTCATGTTCATGAGAATGAGAGGGTCTTAAATGTAACACAACGAAAAGCTACACAAGTGACTAATTCTGTTGTCACAAATATAACCAACCAAGGAAATGGTAGTGAGAATCAAGCTGAGAAAAAGAATGATTCACAAAAGAGTTCTATTGCCGAGTCAGATAAGCAGGAGCGAGAGCCTAATAAGCCCTCTAGTGATGATGTAGAAGCTCTTCACTCACAGAATGGTACAGATACAACTGAAAAACAACTTGAAACACCTGAAAACTCCAAGGTAGAGGACTCCATTTTGCACAATTCAACGTTGACAATGAAGGATCTTAAGTCAGATGCTGCAGTGGAACAAGTTGATTCCATCTTAACAAATTCATCAGGAGCTCATGAGAGAAACGTGACTAATGGAGAATATAATGGCAAAGCAAATGCTAATGGCAATAGTCATGATGGGTCAGGCAGTGCTTCTGATTCTTCTATTGTTGAAGGAAAAGATGCATCCTCGAGGAATAATGGTGACGCCGGGCAGGTTGAGAATGAGAACATTGATACAAGTAAAAATGAAGATAGAGCTCAAAATGAACCGGTTGAATCATCAATAAAGAAAGAAGAATCCGCACATTGA

Predicted protein sequences of Glyma11g04787

Limit To All Plant Sequences

>Glyma11g04787.1   sequence type=predicted peptide   gene model=Glyma11g04787   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSSQQRNSRCKDFKVKHALQICVLLGVCIWMAYLVQHSREKKRSYGEGTNADSEVVKLGRKDPDPNVEQSSSILHARDKEEKDEEENNHEKQKKTDDVNRVENEIQTQKNEQNNNEEKSEQRKDPVDQDTEENEHKANKESDSVIKENEDNKNKVEEDNQSRGISEEKNETKKEETDKEEDEEINQNRTEARERMEEDHKQEDEEESNATDNEREENDHIQEVDSPEDRVRDQNSERNNEEAKEEYYASSEGLNKTKQSDKRENNEFELESQTNGTEVAHVHENERVLNVTQRKATQVTNSVVTNITNQGNGSENQAEKKNDSQKSSIAESDKQEREPNKPSSDDVEALHSQNGTDTTEKQLETPENSKVEDSILHNSTLTMKDLKSDAAVEQVDSILTNSSGAHERNVTNGEYNGKANANGNSHDGSGSASDSSIVEGKDASSRNNGDAGQVENENIDTSKNEDRAQNEPVESSIKKEESAH*

>Glyma11g04787.2   sequence type=predicted peptide   gene model=Glyma11g04787   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRSSQQRNSRCKDFKVKHALQICVLLGVCIWMAYLVQHSREKKRSYGEGTNADSEVVKLGRKDPDPNVEQSSSILHARDKEEKDEEENNHEKQKKTDDVNRVENEIQTQKNEQNNNEEKSEQRKDPVDQDTEENEHKANKESDSVIKENEDNKNKVEEDNQSRGISEEKNETKKEETDKEEDEEINQNRTEARERMEEDHKQEDEEESNATDNEREENDHIQEVDSPEDRVRDQNSERNNEEAKEEYYASSEGLNKTKQSDKRENNEFELESQTNGTEVAHVHENERVLNVTQRKATQVTNSVVTNITNQGNGSENQAEKKNDSQKSSIAESDKQEREPNKPSSDDVEALHSQNGTDTTEKQLETPENSKVEDSILHNSTLTMKDLKSDAAVEQVDSILTNSSGAHERNVTNGEYNGKANANGNSHDGSGSASDSSIVEGKDASSRNNGDAGQVENENIDTSKNEDRAQNEPVESSIKKEESAH*

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