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Report for Sequence Feature Glyma11g04671

Feature Type:gene_model
Chromosome:Gm11
Start:3198279
stop:3204654
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g04671
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02890AT Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr3:640828-645303 FORWARD LENGTH=994 SoyBaseE_val: 3.00E-40ISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PF00628PFAM PHD-finger JGI ISS
UniRef100_G7K541UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bromodomain adjacent to zinc finger domain protein 2B n=1 Tax=Medicago truncatula RepID=G7K541_MEDTR SoyBaseE_val: 2.00E-38ISS
UniRef100_I1J9I8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1J9I8_SOYBN SoyBaseE_val: 4.00E-101ISS

Expression Patterns of Glyma11g04671
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04671 not represented in the dataset
Glyma11g04671 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04671
ParalogEvidenceComments
Glyma01g40630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04671 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g043500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g04671
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g04671
>Glyma11g04671.2   sequence type=transcript   gene model=Glyma11g04671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGATCTTTAATTTTGGACTCATGATCTCTCTGCCTCTCTATATGTAAAATTCAGGACTCATATTGCATGTTCCCATATAATTCACTTTAATATTATCAATGGTTCTTTATTTTTCTTCTGCATCTCTCTACTTTTATTCCCCTCTCACCCTTCAAAAAGAAAAAAAAATCAGTTATGTCTAACACCTTGTTCCTGGATATTTTATTTCTCTCTTGGCTTCCATGTGATAACAGGTTCTACGTTGTGATACCTGTGGGGCATCAGGGTTTGACAATGAACTCGTTGTTTGTCACAAGTGCAATGAAGGCGCAGAGCACACTTATTGTATGGATCCTGATGAGCAGTCAAAATTAGAAGCAAAACCGGAACTTCGTAAAGATTGGACATGTCAAGAGTGCATGCCGAGGGAAGGTACTAACAAATTAGTGCAAGATGAAGTTGAAGTGGCTGAAAGAAAAAGGAAGGGGCATCTATTTGAAAGTTCAACAGACTCTGAATCTCGTAAAGGCTCAAAATTAAAATCTAGATCTTCATGTACTGGTAAAAGTGGGGAAAATGGTGCTGAGTTATTATCTAGAAGACCACTAGTCCCTGTTAAAAAGTTTAAATTGAAATCGGTAAACAAAATACTTTATTCTGGGCCGGAAAGATCTAGTGGTGAAACTTCATTTCCTGGACATAGAATACTGGTAAGTAATCACGACACTCACAAAGACCCAAACTCTCCAAATGCAAAGAAGAAAAATGAAAGCCAGCATGGTGAACAGCCCACAAAAGCTGGTACATCAATGAGCTTGTCTGAATTATGGACGAATCCTGATTTTGATGGAAATACCTACTTGAGAAACCTGGCAAGCAATCACAACACTCACAAAGACCCAAACTTTCTAAATGGAAAGGAGAAAAATGAGAGTCAGCAAGGTGAACAGCCCACAAAAGCTGGTACATCAATGAGCTTGTCTGAATTATGGACGAATCCTGATTTTGATGGAAATACCTACTTGAGAAACCTGGCAAGCAATCACAACACTCACAAAGACCCAAACTTTCTAAATGGAAAGGAGAAAAATGAGAGTCAGCAAGGTGAACAGCCCACAAAAGCTGCTACATCCATGACCATGTATGAACTAAGGACTGATCCTGCTTTTGATGAAAAGACCTACTTGAGAAACTTGGTGCATGTTGAGGCAGCATATCTTTCACATCGTGTTGTCCCAAAGGCTGATTACAAATGGCTAGGCAAGTTTCAGATACACAACAGTGAGGGGATTGCAAGGACTTGGGATGGGATTCAAGCTCACTTATCAAATTGTGCATCAGTTGAAGTTCTTGAAGTGGCGAATAGGCTTTCTGAGATTATTATTATATTGGAGGAACTACCTCGACTGAGGACTTGGCCATCTCAATTTATGAGAAGTCAAGTCACTGAAAATGATATCGCTCTCTACTTTTTTGCACATGATTCTGATAGCTATATATATTATGAACAATTGGTGAATTACATGATGAATAATGATTTGGCTCTGAAAGGAAATTTGGATGGGGTTGAGCTTTTAATTTTTCCATCTAACATTCTGCCTGGTTATTCCCAGTGTTGGAATGGCATGTTCTTCCTTTGGGGTGTATTCAGAGGACAAAAGGCGAATAACTCAGCCAGCACACCAGTGTCAAATTCTCTCAAGCTAAAAGATGGAGATGCTGCAACAATTTTGCCATCTGATCTCAATGTTTATCCTCAAGATGGAGATGCCGTGGCAATAATTGATGAAATTCCTGAATCTGAACCTTCAGGAGACACAGTTTTGCTGGTTGGAGAGAATTCCGATGGTAAAGGAGGAGTGGCAGATGCAGAGCATGATGCAGTTATAGAAGATATTAATGTTTCACTTTGGCCTGAAAGTGAAACACAAGAAAATGGTTCTGTTGGGATTGAGGACTCTCTTGTACCACTTTCAACTCCAGATTCAGACGAGTTGCAAGCTGCGAGTGCTTTGTTGTTGCTCGCTGAGGGTTTCATAAAGTTTTGAGTGCTGCATTTGAAGAACACCTCTTGTTTATAGTTGTCCTTTTATGTTGCGTGTCACTGGGTCACTGATATTCATAATTCATAACCTGCGGGTACTTCCATTCTTCTCTCTAGGGATAAGTCTTCAATGCCTCATGTGAAGAACGCTTTTTTTTTTTTTTTTAGCTACCCTTAATCCTTTCGTATAATTTAGAATCTAGAATGGAATTGTTTGTTTTTGCTTTCCAGAATTTTTGTCGTTGCAAATTTATGGCACTTGACTTGATTTACTTT
Coding sequences of Glyma11g04671
>Glyma11g04671.1   sequence type=CDS   gene model=Glyma11g04671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGAATATTCACAATTACAACTAGGAAACTATAGGGATGTCTCGGATTTGATGGAGGATGAGGTTCTACGTTGTGATACCTGTGGGGCATCAGGGTTTGACAATGAACTCGTTGTTTGTCACAAGTGCAATGAAGGCGCAGAGCACACTTATTGTATGGATCCTGATGAGCAGTCAAAATTAGAAGCAAAACCGGAACTTCGTAAAGATTGGACATGTCAAGAGTGCATGCCGAGGGAAGGTACTAACAAATTAGTGCAAGATGAAGTTGAAGTGGCTGAAAGAAAAAGGAAGGGGCATCTATTTGAAAGTTCAACAGACTCTGAATCTCGTAAAGGCTCAAAATTAAAATCTAGATCTTCATGTACTGGTAAAAGTGGGGAAAATGGTGCTGAGTTATTATCTAGAAGACCACTAGTCCCTGTTAAAAAGTTTAAATTGAAATCGGTAAACAAAATACTTTATTCTGGGCCGGAAAGATCTAGTGGTGAAACTTCATTTCCTGGACATAGAATACTGGTAAGTAATCACGACACTCACAAAGACCCAAACTCTCCAAATGCAAAGAAGAAAAATGAAAGCCAGCATGGTGAACAGCCCACAAAAGCTGGTACATCAATGAGCTTGTCTGAATTATGGACGAATCCTGATTTTGATGGAAATACCTACTTGAGAAACCTGGCAAGCAATCACAACACTCACAAAGACCCAAACTTTCTAAATGGAAAGGAGAAAAATGAGAGTCAGCAAGGTGAACAGCCCACAAAAGCTGGTACATCAATGAGCTTGTCTGAATTATGGACGAATCCTGATTTTGATGGAAATACCTACTTGAGAAACCTGGCAAGCAATCACAACACTCACAAAGACCCAAACTTTCTAAATGGAAAGGAGAAAAATGAGAGTCAGCAAGGTGAACAGCCCACAAAAGCTGCTACATCCATGACCATGTATGAACTAAGGACTGATCCTGCTTTTGATGAAAAGACCTACTTGAGAAACTTGGTGCATGTTGAGGCAGCATATCTTTCACATCGTGTTGTCCCAAAGGCTGATTACAAATGGCTAGGCAAGTTTCAGATACACAACAGTGAGGGGATTGCAAGGACTTGGGATGGGATTCAAGCTCACTTATCAAATTGTGCATCAGTTGAAGTTCTTGAAGTGGCGAATAGGCTTTCTGAGATTATTATTATATTGGAGGAACTACCTCGACTGAGGACTTGGCCATCTCAATTTATGAGAAGTCAAGTCACTGAAAATGATATCGCTCTCTACTTTTTTGCACATGATTCTGATAGCTATATATATTATGAACAATTGGTGAATTACATGATGAATAATGATTTGGCTCTGAAAGGAAATTTGGATGGGGTTGAGCTTTTAATTTTTCCATCTAACATTCTGCCTGGTTATTCCCAGTGTTGGAATGGCATGTTCTTCCTTTGGGGTGTATTCAGAGGACAAAAGGCGAATAACTCAGCCAGCACACCAGTGTCAAATTCTCTCAAGCTAAAAGATGGAGATGCTGCAACAATTTTGCCATCTGATCTCAATGTTTATCCTCAAGATGGAGATGCCGTGGCAATAATTGATGAAATTCCTGAATCTGAACCTTCAGGAGACACAGTTTTGCTGGTTGGAGAGAATTCCGATGGTAAAGGAGGAGTGGCAGATGCAGAGCATGATGCAGTTATAGAAGATATTAATGTTTCACTTTGGCCTGAAAGTGAAACACAAGAAAATGGTTCTGTTGGGATTGAGGACTCTCTTGTACCACTTTCAACTCCAGATTCAGACGAGTTGCAAGCTGCGAGTGCTTTGTTGTTGCTCGCTGAGGGTTTCATAAAGTTTTGA

>Glyma11g04671.2   sequence type=CDS   gene model=Glyma11g04671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTGATGAGCAGTCAAAATTAGAAGCAAAACCGGAACTTCGTAAAGATTGGACATGTCAAGAGTGCATGCCGAGGGAAGGTACTAACAAATTAGTGCAAGATGAAGTTGAAGTGGCTGAAAGAAAAAGGAAGGGGCATCTATTTGAAAGTTCAACAGACTCTGAATCTCGTAAAGGCTCAAAATTAAAATCTAGATCTTCATGTACTGGTAAAAGTGGGGAAAATGGTGCTGAGTTATTATCTAGAAGACCACTAGTCCCTGTTAAAAAGTTTAAATTGAAATCGGTAAACAAAATACTTTATTCTGGGCCGGAAAGATCTAGTGGTGAAACTTCATTTCCTGGACATAGAATACTGGTAAGTAATCACGACACTCACAAAGACCCAAACTCTCCAAATGCAAAGAAGAAAAATGAAAGCCAGCATGGTGAACAGCCCACAAAAGCTGGTACATCAATGAGCTTGTCTGAATTATGGACGAATCCTGATTTTGATGGAAATACCTACTTGAGAAACCTGGCAAGCAATCACAACACTCACAAAGACCCAAACTTTCTAAATGGAAAGGAGAAAAATGAGAGTCAGCAAGGTGAACAGCCCACAAAAGCTGGTACATCAATGAGCTTGTCTGAATTATGGACGAATCCTGATTTTGATGGAAATACCTACTTGAGAAACCTGGCAAGCAATCACAACACTCACAAAGACCCAAACTTTCTAAATGGAAAGGAGAAAAATGAGAGTCAGCAAGGTGAACAGCCCACAAAAGCTGCTACATCCATGACCATGTATGAACTAAGGACTGATCCTGCTTTTGATGAAAAGACCTACTTGAGAAACTTGGTGCATGTTGAGGCAGCATATCTTTCACATCGTGTTGTCCCAAAGGCTGATTACAAATGGCTAGGCAAGTTTCAGATACACAACAGTGAGGGGATTGCAAGGACTTGGGATGGGATTCAAGCTCACTTATCAAATTGTGCATCAGTTGAAGTTCTTGAAGTGGCGAATAGGCTTTCTGAGATTATTATTATATTGGAGGAACTACCTCGACTGAGGACTTGGCCATCTCAATTTATGAGAAGTCAAGTCACTGAAAATGATATCGCTCTCTACTTTTTTGCACATGATTCTGATAGCTATATATATTATGAACAATTGGTGAATTACATGATGAATAATGATTTGGCTCTGAAAGGAAATTTGGATGGGGTTGAGCTTTTAATTTTTCCATCTAACATTCTGCCTGGTTATTCCCAGTGTTGGAATGGCATGTTCTTCCTTTGGGGTGTATTCAGAGGACAAAAGGCGAATAACTCAGCCAGCACACCAGTGTCAAATTCTCTCAAGCTAAAAGATGGAGATGCTGCAACAATTTTGCCATCTGATCTCAATGTTTATCCTCAAGATGGAGATGCCGTGGCAATAATTGATGAAATTCCTGAATCTGAACCTTCAGGAGACACAGTTTTGCTGGTTGGAGAGAATTCCGATGGTAAAGGAGGAGTGGCAGATGCAGAGCATGATGCAGTTATAGAAGATATTAATGTTTCACTTTGGCCTGAAAGTGAAACACAAGAAAATGGTTCTGTTGGGATTGAGGACTCTCTTGTACCACTTTCAACTCCAGATTCAGACGAGTTGCAAGCTGCGAGTGCTTTGTTGTTGCTCGCTGAGGGTTTCATAAAGTTTTGA
Predicted protein sequences of Glyma11g04671
>Glyma11g04671.1   sequence type=predicted peptide   gene model=Glyma11g04671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQEYSQLQLGNYRDVSDLMEDEVLRCDTCGASGFDNELVVCHKCNEGAEHTYCMDPDEQSKLEAKPELRKDWTCQECMPREGTNKLVQDEVEVAERKRKGHLFESSTDSESRKGSKLKSRSSCTGKSGENGAELLSRRPLVPVKKFKLKSVNKILYSGPERSSGETSFPGHRILVSNHDTHKDPNSPNAKKKNESQHGEQPTKAGTSMSLSELWTNPDFDGNTYLRNLASNHNTHKDPNFLNGKEKNESQQGEQPTKAGTSMSLSELWTNPDFDGNTYLRNLASNHNTHKDPNFLNGKEKNESQQGEQPTKAATSMTMYELRTDPAFDEKTYLRNLVHVEAAYLSHRVVPKADYKWLGKFQIHNSEGIARTWDGIQAHLSNCASVEVLEVANRLSEIIIILEELPRLRTWPSQFMRSQVTENDIALYFFAHDSDSYIYYEQLVNYMMNNDLALKGNLDGVELLIFPSNILPGYSQCWNGMFFLWGVFRGQKANNSASTPVSNSLKLKDGDAATILPSDLNVYPQDGDAVAIIDEIPESEPSGDTVLLVGENSDGKGGVADAEHDAVIEDINVSLWPESETQENGSVGIEDSLVPLSTPDSDELQAASALLLLAEGFIKF*

>Glyma11g04671.2   sequence type=predicted peptide   gene model=Glyma11g04671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPDEQSKLEAKPELRKDWTCQECMPREGTNKLVQDEVEVAERKRKGHLFESSTDSESRKGSKLKSRSSCTGKSGENGAELLSRRPLVPVKKFKLKSVNKILYSGPERSSGETSFPGHRILVSNHDTHKDPNSPNAKKKNESQHGEQPTKAGTSMSLSELWTNPDFDGNTYLRNLASNHNTHKDPNFLNGKEKNESQQGEQPTKAGTSMSLSELWTNPDFDGNTYLRNLASNHNTHKDPNFLNGKEKNESQQGEQPTKAATSMTMYELRTDPAFDEKTYLRNLVHVEAAYLSHRVVPKADYKWLGKFQIHNSEGIARTWDGIQAHLSNCASVEVLEVANRLSEIIIILEELPRLRTWPSQFMRSQVTENDIALYFFAHDSDSYIYYEQLVNYMMNNDLALKGNLDGVELLIFPSNILPGYSQCWNGMFFLWGVFRGQKANNSASTPVSNSLKLKDGDAATILPSDLNVYPQDGDAVAIIDEIPESEPSGDTVLLVGENSDGKGGVADAEHDAVIEDINVSLWPESETQENGSVGIEDSLVPLSTPDSDELQAASALLLLAEGFIKF*






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