SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17830 | AT | Annotation by Michelle Graham. TAIR10: Peptidase M20/M25/M40 family protein | chr4:9915916-9918049 FORWARD LENGTH=440 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008237 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2276 | KOG | Metalloexopeptidases | JGI | ISS | |
| PTHR11014 | Panther | PROTEASE M20-RELATED | JGI | ISS | |
| PTHR11014:SF7 | Panther | gb def: arge/dape/acy1 family protein [deinococcus radiodurans] | JGI | ISS | |
| PF01546 | PFAM | Peptidase family M20/M25/M40 | JGI | ISS | |
| PF07687 | PFAM | Peptidase dimerisation domain | JGI | ISS | |
| UniRef100_G7JZY6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: N-acetylornithine deacetylase-like protein n=1 Tax=Medicago truncatula RepID=G7JZY6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LH18 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH18_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma11g04650 not represented in the dataset |
Glyma11g04650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g40661 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g043300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g04650.1 sequence type=CDS gene model=Glyma11g04650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGGCGACGAACTTGTTAGCAACACTGGGGGATCTGGAGAGGGACTCCTTCGTGGCTCTTCTTTCGAAGCTGATCGCTGAATCGAAGTACGTCCAGAACAACCCGCCGGAGCTCATTCCCCAAGAGGACAGAGTGGTGAAGCACGTCTTGGACGTTCTGTTACCGTTCAGCACCACCACCGGCGGTGGACCCTTGCTCGTAAACCACGTCACCTACCACGCCGGCAGAGGGAACCTCATCGTGGAGTACCCCGGCACCGTTCCCGGCAAAATCCTCTCGTTCGTCGGATGCCACATGGACGTCGTGACCGCCAATCCCAACGATTGGGATTTCGATCCATTTTCGTTGAGCGTTGACGGTGATAAGCTTCGGGGTCGTGGAACTACTGACTGTTTGGGACACGTGGCGCTTGTCACGGAACTCATGAGGAAGCTCGGGGAGACCAAGCCCAATTTGAAGTCAAGTGTTGTTGCTGTTTTTATCGCCAATGAAGAGAATTCTGCGATAACTGGTGTTGGTGTGGATGCACTTGTCAAAGATGGCCTCCTCAATAAACTCAAGGATGGCCCTCTGTATTGGATTGACACGGCGGATAAACAACCATGCGTTGGGACTGGTGGTATGATACCTTGGAAACTTCACGTCACCGGGAGGCTCTTTCATAGTGGATTAGCTCATAAAGCTATAAATGCGCTAGAGCTAGCCATGGATGCTCTAAAGGAAATCCAGTTGCGATTTTACTCAGACTTCCCACCTCATCCTCAGGAACAGGTTTATGGGTTTGCAACCCCTTCAACCCTGAAGCCAACCCAATGGAGTTATCCAGGAGGTGGAATCAATCAAATTCCAGGGGAATGTACAATTTCAGGAGATGTCAGATTAACTCCATTCTACAATGTAAAGGATGTTATGAAAAAGCTGCAAGAATACGTGGACGATATTAATGAGAGTGCACAGAAGCTAGAATCTAGGGGTCCAGTTTCAAAATATGTCCTACCTGATGAAAACATAAGAGGAAGACTTACTTTATCTTTTGATGAGGCACTGTCTGGAGTTGCTTGTGATCTTAATTCTAGAGGTTTTCATGTTTTATGCAAAGCAACTGAAGAAGTAGTTGGGTATGTAAAGCCTTACTCTATTACTGGGAGTTTGCCTCTCATTCGGGAACTACAGGAAGAAGGTTTTGATGTTCAAACTTCTGGCTACGGCCTAATGGCTACTTACCATGCCCAGAATGAGTACTGCCTCTTTACGGATATGTCCCAAGGATATCGGGTCTTCGCGAGAATCATCTCTCAATTGGAAGAGTGA
>Glyma11g04650.1 sequence type=predicted peptide gene model=Glyma11g04650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAATNLLATLGDLERDSFVALLSKLIAESKYVQNNPPELIPQEDRVVKHVLDVLLPFSTTTGGGPLLVNHVTYHAGRGNLIVEYPGTVPGKILSFVGCHMDVVTANPNDWDFDPFSLSVDGDKLRGRGTTDCLGHVALVTELMRKLGETKPNLKSSVVAVFIANEENSAITGVGVDALVKDGLLNKLKDGPLYWIDTADKQPCVGTGGMIPWKLHVTGRLFHSGLAHKAINALELAMDALKEIQLRFYSDFPPHPQEQVYGFATPSTLKPTQWSYPGGGINQIPGECTISGDVRLTPFYNVKDVMKKLQEYVDDINESAQKLESRGPVSKYVLPDENIRGRLTLSFDEALSGVACDLNSRGFHVLCKATEEVVGYVKPYSITGSLPLIRELQEEGFDVQTSGYGLMATYHAQNEYCLFTDMSQGYRVFARIISQLEE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
