Glyma11g04600 - SoyBase

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Report for Sequence Feature Glyma11g04600

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3121255
stop:	3126902
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46630	AT	Annotation by Michelle Graham. TAIR10: Clathrin adaptor complexes medium subunit family protein \| chr5:18920580-18923252 FORWARD LENGTH=438	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0030125	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin vesicle coat	SoyBase	N/A	ISS
GO:0030131	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin adaptor complex	SoyBase	N/A	ISS
GO:0030132	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat of coated pit	SoyBase	N/A	ISS
KOG0938	KOG	Adaptor complexes medium subunit family	JGI		ISS
PTHR11998	Panther	CLATHRIN COAT ASSEMBLY PROTEIN	JGI		ISS
PTHR11998:SF12	Panther	gb def: clathrin coat assembly protein [schizosaccharomyces pombe]	JGI		ISS
PF00928	PFAM	Adaptor complexes medium subunit family	JGI		ISS
UniRef100_G7JZX7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP-2 complex subunit mu n=1 Tax=Medicago truncatula RepID=G7JZX7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LH11	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH11_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04600 not represented in the dataset	Glyma11g04600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04600

Paralog	Evidence	Comments
Glyma01g40700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g042800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g04600

Limit To All Plant Sequences

>Glyma11g04600.2   sequence type=transcript   gene model=Glyma11g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGATAATAGAATATATATAATTCCATGAATATATGAAAATATCAAATATCATTTTGTGGGAGGGAGTAGAGGGGAAACAGCTCATCACAGATATTCCTGTTCAGAATGTGACTTCACAAGTTAGTGGCTGTGTGCGCATGTGTAATCTGTCTGTCCATTTGTTTTTTGTTGAGTTTACATTTTTTAATATGTTGTGTTGTTTGAATATTTCACCAATCCTTTTGTTCATCTCATCTCGTGTGCAATGCTTGGGGGAACAGCCCTCAGATAGACCTATTCCAAATGCAACTTTACAAGTTACCGGTGCTGTTGGTTGGCGGAGAGAAGGCCTTGTATACAAAAAGAATGAGGTCTTCTTGGATATTGTTGAGAGTGTGAATCTTCTTATGTCTTCAAAAGGTGTTGTTTTACGCTGTGATGTTACGGGGAAGGTTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTGAAGTTGGGTTTGAATGACAAGATTGGCCTTGAGAAAGAGTCACAACTTAAATCTCGTCCTACTAAAAGTGGTAAAACTATTGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAATATCGTATCACTGAGGGTGTTAATCTTCCCTTCAAAGTATTGCCAACCATAAAGGAACTTGGTCGAACACGGATGGAAGTAAATGTTAAGGTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAAATTCCTGTGCCAAAACATACTGCCAAAACGAGTTTCACAGTAACATCTGGCCGAGCAAAGTATAATGCGTCTATTGATTGTTTGGTTTGGAAAATAAGAAAATTTCCTGGGCAAACTGAGCCAACCTTGAGTGCAGAAATTGAACTTATTTCCACAATGACAGAAAAGAAATCTTCGACTAGACCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACGGCATCTGGTTTACGAGTCCGTTTTCTTAAGGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACAAAAGCGGGATCATACGAGGTAAGGTGCTAGGCAACACATGTGGAAGCGTCAGGATTAATTGGTGGAGATTGAAACAGTCCCAAATAATTAAAGGCTCTGTTCCGTGTAGTTGTCCAGTTATAGCTGAGTTTTTTTGTTAAGGTTGAGGGGTCCCTCTTCATATAGTGTGCTGTCAAAATGATTGTGGACGTGGAAATCAGTTGAGTATATATATTTTTTTTTACCTTCAAGGCCAGCTTGTTAATGGAATATTTTTTTTATATAGTGTACACATTGTATTTTACTTTAATGATAATTTTTATTGAGTAGTGCATTCTGT

>Glyma11g04600.3   sequence type=transcript   gene model=Glyma11g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCATTGCTGAACGGGGTTGGGGTGTTGCCGTATTGGTGTGCGGTGTGCCAAAAACGCTGACTCGTCATTCTCCAACATTTCTTCATTTTGTCGCGCTCCTTCTTCTCTTCTCCGTCGACGACGTTTGTTTGCTCCTCCTCCTCCTCGAAGCCACAGATCTGCTGCGGAGCTACCGTATCCTGTATTTATTCTTCTTCTTCTGTAAGCTTCTTCGTCGGAGAATTTGGAATTTGATACACTGGATCGGATATGCCGGTGGCTGCTTCCGCTATATACTTCTTGAACCTCCGCGGAGACGTTCTCATCAATCGCCTCTACCGGGACGATGTCGGGGGAAATATGGTCGATGCTTTTCGGACACATATAATGCAAACAAAAGAACTTGGTACTTGTCCTGTGAAGCAGATTGGTGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTACATCGTGATTGTTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGGTTTATTGTATTCCATCGTTCCTCAACTCTGATACGAAGGCTTTACTGCTTGTGCACTGCTTTCTGTCTTCCAATTCTTGATATTTGACTATAGTTAACACTTAAATTTGGCTGTATAAAATGATCATGATTGATAACATGTCATCTTTGCAGGCTGTTGCACTATTCAAATCATATTTTGGTGGTGCCTTTGACGAGGATGCAATTCGCAATAATTTTGTACTCATTTATGAACTCCTAGATGAAATCATGGACTTTGGTTATCCTCAAAATCTTTCACCGGAAATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCTTCCAAGCCCTCAGATAGACCTATTCCAAATGCAACTTTACAAGTTACCGGTGCTGTTGGTTGGCGGAGAGAAGGCCTTGTATACAAAAAGAATGAGGTCTTCTTGGATATTGTTGAGAGTGTGAATCTTCTTATGTCTTCAAAAGGTGTTGTTTTACGCTGTGATGTTACGGGGAAGGTTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTGAAGTTGGGTTTGAATGACAAGATTGGCCTTGAGAAAGAGTCACAACTTAAATCTCGTCCTACTAAAAGTGGTAAAACTATTGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAATATCGTATCACTGAGGGTGTTAATCTTCCCTTCAAAGTATTGCCAACCATAAAGGAACTTGGTCGAACACGGATGGAAGTAAATGTTAAGGTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAAATTCCTGTGCCAAAACATACTGCCAAAACGAGTTTCACAGTAACATCTGGCCGAGCAAAGTATAATGCGTCTATTGATTGTTTGGTTTGGAAAATAAGAAAATTTCCTGGGCAAACTGAGCCAACCTTGAGTGCAGAAATTGAACTTATTTCCACAATGACAGAAAAGAAATCTTCGACTAGACCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACGGCATCTGGTTTACGAGTCCGTTTTCTTAAGGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACAAAAGCGGGATCATACGAGGTAAGGTGCTAGGCAACACATGTGGAAGCGTCAGGATTAATTGGTGGAGATTGAAACAGTCCCAAATAATTAAAGGCTCTGTTCCGTGTAGTTGTCCAGTTATAGCTGAGTTTTTTTGTTAAGGTTGAGGGGTCCCTCTTCATATAGTGTGCTGTCAAAATGATTGTGGACGTGGAAATCAGTTGAGTATATATATTTTTTTTTACCTTCAAGGCCAGCTTGTTAATGGAATATTTTTTTTATATAGTGTACACATTGTATTTTACTTTAATGATAATTTTTATTGAGTAGTGCATTCTGTAAATTTTTTGTTTCACTTCATGTTGGCGTTGATCTATACTGAAG

Coding sequences of Glyma11g04600

Limit To All Plant Sequences

>Glyma11g04600.1   sequence type=CDS   gene model=Glyma11g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGTGGCTGCTTCCGCTATATACTTCTTGAACCTCCGCGGAGACGTTCTCATCAATCGCCTCTACCGGGACGATGTCGGGGGAAATATGGTCGATGCTTTTCGGACACATATAATGCAAACAAAAGAACTTGGTACTTGTCCTGTGAAGCAGATTGGTGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTACATCGTGATTGTTGTCAGCAGCAATGCTAATGTAGCTTGTGCTTTTAAGTTTGTTGTTGAGGCTGTTGCACTATTCAAATCATATTTTGGTGGTGCCTTTGACGAGGATGCAATTCGCAATAATTTTGTACTCATTTATGAACTCCTAGATGAAATCATGGACTTTGGTTATCCTCAAAATCTTTCACCGGAAATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCTTCCAAGCCCTCAGATAGACCTATTCCAAATGCAACTTTACAAGTTACCGGTGCTGTTGGTTGGCGGAGAGAAGGCCTTGTATACAAAAAGAATGAGGTCTTCTTGGATATTGTTGAGAGTGTGAATCTTCTTATGTCTTCAAAAGGTGTTGTTTTACGCTGTGATGTTACGGGGAAGGTTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTGAAGTTGGGTTTGAATGACAAGATTGGCCTTGAGAAAGAGTCACAACTTAAATCTCGTCCTACTAAAAGTGGTAAAACTATTGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAATATCGTATCACTGAGGGTGTTAATCTTCCCTTCAAAGTATTGCCAACCATAAAGGAACTTGGTCGAACACGGATGGAAGTAAATGTTAAGGTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAAATTCCTGTGCCAAAACATACTGCCAAAACGAGTTTCACAGTAACATCTGGCCGAGCAAAGTATAATGCGTCTATTGATTGTTTGGTTTGGAAAATAAGAAAATTTCCTGGGCAAACTGAGCCAACCTTGAGTGCAGAAATTGAACTTATTTCCACAATGACAGAAAAGAAATCTTCGACTAGACCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACGGCATCTGGTTTACGAGTCCGTTTTCTTAAGGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACAAAAGCGGGATCATACGAGGTAAGGTGCTAG

>Glyma11g04600.2   sequence type=CDS   gene model=Glyma11g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATATCAAATATCATTTTGTGGGAGGGAGTAGAGGGGAAACAGCTCATCACAGATATTCCTGTTCAGAATGTGACTTCACAAGTTAGTGGCTGTGTGCGCATGTGTAATCTGTCTGTCCATTTGTTTTTTGTTGAGTTTACATTTTTTAATATGTTGTGTTGTTTGAATATTTCACCAATCCTTTTGTTCATCTCATCTCGTGTGCAATGCTTGGGGGAACAGCCCTCAGATAGACCTATTCCAAATGCAACTTTACAAGTTACCGGTGCTGTTGGTTGGCGGAGAGAAGGCCTTGTATACAAAAAGAATGAGGTCTTCTTGGATATTGTTGAGAGTGTGAATCTTCTTATGTCTTCAAAAGGTGTTGTTTTACGCTGTGATGTTACGGGGAAGGTTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTGAAGTTGGGTTTGAATGACAAGATTGGCCTTGAGAAAGAGTCACAACTTAAATCTCGTCCTACTAAAAGTGGTAAAACTATTGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAATATCGTATCACTGAGGGTGTTAATCTTCCCTTCAAAGTATTGCCAACCATAAAGGAACTTGGTCGAACACGGATGGAAGTAAATGTTAAGGTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAAATTCCTGTGCCAAAACATACTGCCAAAACGAGTTTCACAGTAACATCTGGCCGAGCAAAGTATAATGCGTCTATTGATTGTTTGGTTTGGAAAATAAGAAAATTTCCTGGGCAAACTGAGCCAACCTTGAGTGCAGAAATTGAACTTATTTCCACAATGACAGAAAAGAAATCTTCGACTAGACCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACGGCATCTGGTTTACGAGTCCGTTTTCTTAAGGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACAAAAGCGGGATCATACGAGGTAAGGTGCTAG

>Glyma11g04600.3   sequence type=CDS   gene model=Glyma11g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATGATTGATAACATGTCATCTTTGCAGGCTGTTGCACTATTCAAATCATATTTTGGTGGTGCCTTTGACGAGGATGCAATTCGCAATAATTTTGTACTCATTTATGAACTCCTAGATGAAATCATGGACTTTGGTTATCCTCAAAATCTTTCACCGGAAATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCTTCCAAGCCCTCAGATAGACCTATTCCAAATGCAACTTTACAAGTTACCGGTGCTGTTGGTTGGCGGAGAGAAGGCCTTGTATACAAAAAGAATGAGGTCTTCTTGGATATTGTTGAGAGTGTGAATCTTCTTATGTCTTCAAAAGGTGTTGTTTTACGCTGTGATGTTACGGGGAAGGTTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTGAAGTTGGGTTTGAATGACAAGATTGGCCTTGAGAAAGAGTCACAACTTAAATCTCGTCCTACTAAAAGTGGTAAAACTATTGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAATATCGTATCACTGAGGGTGTTAATCTTCCCTTCAAAGTATTGCCAACCATAAAGGAACTTGGTCGAACACGGATGGAAGTAAATGTTAAGGTAAAGAGTGTCTTTGGTGCGAAGATGTTTGCACTAGGGGTTGTTGTTAAAATTCCTGTGCCAAAACATACTGCCAAAACGAGTTTCACAGTAACATCTGGCCGAGCAAAGTATAATGCGTCTATTGATTGTTTGGTTTGGAAAATAAGAAAATTTCCTGGGCAAACTGAGCCAACCTTGAGTGCAGAAATTGAACTTATTTCCACAATGACAGAAAAGAAATCTTCGACTAGACCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACGGCATCTGGTTTACGAGTCCGTTTTCTTAAGGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACAAAAGCGGGATCATACGAGGTAAGGTGCTAG

Predicted protein sequences of Glyma11g04600

Limit To All Plant Sequences

>Glyma11g04600.1   sequence type=predicted peptide   gene model=Glyma11g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVKQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDRPIPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGVVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKHTAKTSFTVTSGRAKYNASIDCLVWKIRKFPGQTEPTLSAEIELISTMTEKKSSTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEVRC*

>Glyma11g04600.2   sequence type=predicted peptide   gene model=Glyma11g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKISNIILWEGVEGKQLITDIPVQNVTSQVSGCVRMCNLSVHLFFVEFTFFNMLCCLNISPILLFISSRVQCLGEQPSDRPIPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGVVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKHTAKTSFTVTSGRAKYNASIDCLVWKIRKFPGQTEPTLSAEIELISTMTEKKSSTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEVRC*

>Glyma11g04600.3   sequence type=predicted peptide   gene model=Glyma11g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIMIDNMSSLQAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDRPIPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGVVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKHTAKTSFTVTSGRAKYNASIDCLVWKIRKFPGQTEPTLSAEIELISTMTEKKSSTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEVRC*

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