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Report for Sequence Feature Glyma11g04570

Feature Type:gene_model
Chromosome:Gm11
Start:3103359
stop:3107812
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17970AT Annotation by Michelle Graham. TAIR10: aluminum-activated, malate transporter 12 | chr4:9975482-9977722 FORWARD LENGTH=560 SoyBaseE_val: 0ISS
GO:0010044GO-bp Annotation by Michelle Graham. GO Biological Process: response to aluminum ion SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0012505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system SoyBaseN/AISS
GO:0008509GO-mf Annotation by Michelle Graham. GO Molecular Function: anion transmembrane transporter activity SoyBaseN/AISS
KOG4711 KOG Predicted membrane protein JGI ISS
PF11744PFAM Aluminium activated malate transporter JGI ISS
UniRef100_I1LH08UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH08_SOYBN SoyBaseE_val: 0ISS
UniRef100_O49696UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter 12 n=2 Tax=Arabidopsis thaliana RepID=ALMTC_ARATH SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g40760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g042500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g04570.1   sequence type=CDS   gene model=Glyma11g04570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCCAAAGTTTATGCTGGTCAGGAAATGGCAGTGGTTGAGAATGAGAATTGCATGATGAATGGGAAGTGGAAGAAACGTGTGCATGTTTTTGGTGAGAGGGTGATGAGATTTCCTAACAAGGCTTGGCAGACTACGTGGAAAGTGGGACGTGAAGACCCAAGAAGGTTGATCCATGCATTCAAAGTGGGTTTGTCTCTAACTCTTGTTTCTTTGTTGTATTTGTTGGAGCCCCTTTACAAGGGGATTGGACAGAGTGCTATTTGGGCTGTCATGACCGTGGTTGTTGTGTTGGAATTCACCGCAGGGGCAACTTTATGCAAAGGACTCAACAGAGGATTGGGGACATTGTTAGCGGGATTATTGGCATTTCTTGTTGGGTATATTGCAAGTGCATCTGGCCGAGTCTGTCAAGCTATTATCATCGGAGCTGCAGTTTTTTCTATAGGAGCTCTTGCTACTTATATGAGGTTTATTCCCTATATAAAGAAGAATTATGACTATGGTCTAGTTATATTTCTCTTGACTTTCAACCTGATTGCTGTGTCGAGCTACCGGGCTGAAAATGTCTTGAAAATTGCACATGATCGCGTATACACCATTGCCATAGGCTGTGCTGTTTGCCTTCTGATGAGTCTACTGGTATTTCCAAATTGGTCAGGCGAAGATCTCCATAATTCCACGGTTTACAAGCTCGAAGGCCTTGCCAAATCTATAGAAGCTTGTGTGAATGAGTACTTTTACGGAGAAATTGAAGGCTCTGGGGATATGAAATTATCTGAGGATCCAATATACAAAGGTTATAAGGCTGTTTTGGATTCAAAATCCATTGATGAAACACTGGCATTGCATGCAAGTTGGGAGCCAAGGCATTCAAGGTACTGCCACAGGTTTCCATGGCAGCAATATGTAAAAGTCGGAGCTGTTCTTCGTCAATTTGGTTATACTGTGGTAGCCCTACATGGCTGTTTGAGAACAGAAATTCAGACACCTAGATCTGTTAGAGCCATGTTCAAGGACCCCTGCATTCGGCTAGCAGCAGAGGTATCGAAAGTACTGATAGAACTTTCCAACAGCATAAGGAATCGCCGGCATTGCTCTCCAGAAATACTCTCGGATCATCTGCACGAAGCCTTACAGGACCTAAACACTGCCATAAAATCTCAACCTCGACTCTTCTTAGGCCCCAAAAACAGGCACAACCAAGCCACCAACATGCTCAAAATAGCTGCCGAACAAGTTGGACAAGAAAGACATGGAAAGACCTCCCTTTCAAGTGTTAAAACCGACTCTTCGGCGTTGCTGGAATGGAAAACAAAAAGGGTTTCAGTTGAACAGACAAAGGAATCAGAAAGGAAGTCTTTGAGGCCGCAACTGAGTAAAATTGCAATAACTAGCCTTGAGTTCTCTGAGGCGCTTCCTTTCGCCGCCTTTGCGTCTTTGCTTGTGGAAACAGTGGCTAAACTGGACCTTGTCATAGAGGAAGTTGAGGAACTGGGGAGACTAGCATGCTTTAAAGACTTCATACCCGGGGATGACTTTGTTGTCACTTGTCAGGAGCCTCGAATTGACGTGTCACAGAACCATTTACCTTCTCATGGAGCCGACTAA

>Glyma11g04570.1   sequence type=predicted peptide   gene model=Glyma11g04570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPKVYAGQEMAVVENENCMMNGKWKKRVHVFGERVMRFPNKAWQTTWKVGREDPRRLIHAFKVGLSLTLVSLLYLLEPLYKGIGQSAIWAVMTVVVVLEFTAGATLCKGLNRGLGTLLAGLLAFLVGYIASASGRVCQAIIIGAAVFSIGALATYMRFIPYIKKNYDYGLVIFLLTFNLIAVSSYRAENVLKIAHDRVYTIAIGCAVCLLMSLLVFPNWSGEDLHNSTVYKLEGLAKSIEACVNEYFYGEIEGSGDMKLSEDPIYKGYKAVLDSKSIDETLALHASWEPRHSRYCHRFPWQQYVKVGAVLRQFGYTVVALHGCLRTEIQTPRSVRAMFKDPCIRLAAEVSKVLIELSNSIRNRRHCSPEILSDHLHEALQDLNTAIKSQPRLFLGPKNRHNQATNMLKIAAEQVGQERHGKTSLSSVKTDSSALLEWKTKRVSVEQTKESERKSLRPQLSKIAITSLEFSEALPFAAFASLLVETVAKLDLVIEEVEELGRLACFKDFIPGDDFVVTCQEPRIDVSQNHLPSHGAD*







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