Glyma11g04540 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g04540

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3093707
stop:	3099173
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35350	AT	Annotation by Michelle Graham. TAIR10: poltergeist like 1 \| chr2:14881360-14884116 REVERSE LENGTH=783	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010074	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity	SoyBase	N/A	ISS
GO:0018345	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein palmitoylation	SoyBase	N/A	ISS
GO:0018377	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
KOG0700	KOG	Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF170	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9S1H8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9S1H8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LH05	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH05_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04540

Paralog	Evidence	Comments
Glyma01g40780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g042300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g04540

Limit To All Plant Sequences

>Glyma11g04540.1   sequence type=CDS   gene model=Glyma11g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTTGCTTCAAAGCCTCCTCCAACCACACACCTAACCAAAACCAGCTGGTGTTTGCAGAGACGGAGCCATTGGACGAAACCCTAGGTCATTCCTTTTGCTACGTTAGATCTTCCGCTCGTTTTCTCTCTCCCTCCCATTCCCTCTCTCCCTCCAACTCCCTCCGCTTCTCCCCTTCTCACCGCCCCGATTTCCCCGAAACCGCATTCAAAGCCATTTCCGGCGCCTCCGTCAGCGCCAACAGCTCCGTCCCCAAAACCGTCCTCCCCACCGACGACGACGCCACCGTCAATGGCTTCAAAGGAACTTCTTCTTTTAGCGCCATCCCCCTCCAGCCTGTTCCCAGAGCAGGAGGAGCTGAAGAGAGAGAGAGGCGGGCCTTCTTCCTCTCGGGTCCAATTGAGAGCGGCTCGCTCTCCGGACCCCTCTACGACGCCGTTTCCAGCTCCGCGGGAGTGCCTTTCTCTGCTCCGCTTGGTGGTTCAGTCTATGTGAAGAAGAAGCGGAAGAAGAGCATTGCAGGGTTGAGAAAAGCCTTCCAGAGGAGTCTCTCCGAGAAGAAGCGCCCGGTGGGGAGGAAGGGGAAGACGGAGGCGAAGAACGAGCGCGAAACCGGTAGCAATGTGCAGTGGGCGCTGGGAAAAGCGGGGGAGGATCGTGTGCATGTGGTTGTATCGGAAGAACAGGGTTGGCTGTTCGTGGGGATTTATGACGGTTTCAATGGCCCTGATGCGCCCGAGTTTCTCATGGGTAATCTTTACCGTGCACTTCACAAAGAGCTCCAGGGTTTGTTTTGGGAACTTGAAGAGCCAGAACCAGAGCCGCAGCCGCAGGTGCAGGCAGTAGAGCATAATGAAGCTGAATCCCACAATGACTGGGAGGTTGAACAAGAGTCTAATTCTAATTCTCTCCAAGGATCGGTTAAGAGAGTGACGTTTCATGCGGAGGGGACTGAGAGTAGGAGAAGGAGGTTGTGGGAGTTTCTGGCCGAGGATGATGATGATGCTGAGGACGGCCTTGATCTTTCCGGGTCGGATAGGTTTGCCTTTTCGGTGGATGATGCTCTCAGTGTTAGCAAGGAGGGTTCTGGAGGTAGTAGACGGTGGTTGATTTTGTCTAAGTTGAAGCATGGGTTGTCGAGGCATAAGGAGGGTCATGGGAGAAGGTTGTTTCCGTGGAGCTTGGGCGTGGGGGCGGAGGAGAAGGAGAAGGTTGAGGAGGAAAATCCGGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGAAGGGTCGCGGTGGGAGGAAGAAGAAGGTGGGGCCTGTGGATCATGAGTTGGTTTTGAGGGCGTTGTCTCGGGCGCTTGAGATGACTGAGCTTGCGTATTTGGATATGACGGATAAGCTTATTGATACCAATCCGGAGCTTGCTTTGATGGGGTCATGCCTGTTGGTTGTGTTGATGAGGGATGAGGATGTTTATGTGATGAATGTCGGGGATAGCCGTGCCATTGTGGCACATTATGAGTGTGAAGAGGTTCATGCTAGTAAGGAATCCGGAGGCGGTGCAGACGTTGAGTCAAGCGGGGAGTGCATAGTGGAGGAGAACTTAGCTCGGGATGAAGGTGGTGTGGTGTTGAGGAATGAGGGTCCTGCTCAGGAAAGGAGGTTGGTTGCATTGCAGCTCTCCACTGACCACAGCACCAGCATTGAAGAGGAAGTTGTTAGGATTAAGAATGAGCACCCTGATGATAACCAATGTATTGTAAATGATAGAGTAAAAGGCCGTCTTAAGGTTACTAGAGCTTTTGGAGCTGGATTTTTGAAACAGCCGAAGTGGAATGATGTAGTACTAGAAATGTTTCGAAATGAATATATTGGCACTGCTCCATATATATCCTGCTGTCCTTCATTACGTCACCATAGATTATGCCCAAGAGACCAGTTCTTGATCCTCTCATCTGATGGGTTGTATCAATATCTTAGCAATCAGGAAGTGGTTTCTGAAGTTGAGAGTTTCATGGAAAAGTTTCCAGATGGAGATCCTGCCCAGCATTTAATAGAGGAGCTGCTCCTACGTGCAGCTAAAAAAGCTGGAATGGATTTCCATGAGTTGCTGGATATCCCTCAAGGAGATCGGAGGAAGTACCATGATGATGTTACCGTTATGGTGGTATCACTTGAAGGAAGAATCTGGAAATCATCAGGGAAGTATCCGTGA

Predicted protein sequences of Glyma11g04540

Limit To All Plant Sequences

>Glyma11g04540.1   sequence type=predicted peptide   gene model=Glyma11g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSCFKASSNHTPNQNQLVFAETEPLDETLGHSFCYVRSSARFLSPSHSLSPSNSLRFSPSHRPDFPETAFKAISGASVSANSSVPKTVLPTDDDATVNGFKGTSSFSAIPLQPVPRAGGAEERERRAFFLSGPIESGSLSGPLYDAVSSSAGVPFSAPLGGSVYVKKKRKKSIAGLRKAFQRSLSEKKRPVGRKGKTEAKNERETGSNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRALHKELQGLFWELEEPEPEPQPQVQAVEHNEAESHNDWEVEQESNSNSLQGSVKRVTFHAEGTESRRRRLWEFLAEDDDDAEDGLDLSGSDRFAFSVDDALSVSKEGSGGSRRWLILSKLKHGLSRHKEGHGRRLFPWSLGVGAEEKEKVEEENPVAEEEEEEEEKGRGGRKKKVGPVDHELVLRALSRALEMTELAYLDMTDKLIDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAHYECEEVHASKESGGGADVESSGECIVEENLARDEGGVVLRNEGPAQERRLVALQLSTDHSTSIEEEVVRIKNEHPDDNQCIVNDRVKGRLKVTRAFGAGFLKQPKWNDVVLEMFRNEYIGTAPYISCCPSLRHHRLCPRDQFLILSSDGLYQYLSNQEVVSEVESFMEKFPDGDPAQHLIEELLLRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVVSLEGRIWKSSGKYP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain