Glyma11g04530 - SoyBase

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Report for Sequence Feature Glyma11g04530

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3082542
stop:	3084568
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35370	AT	Annotation by Michelle Graham. TAIR10: glycine decarboxylase complex H \| chr2:14891239-14892050 FORWARD LENGTH=165	SoyBase	E_val: 2.00E-92	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006546	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine catabolic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009814	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019464	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine decarboxylation via glycine cleavage system	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005960	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: glycine cleavage complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0004375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycine dehydrogenase (decarboxylating) activity	SoyBase	N/A	ISS
KOG3373	KOG	Glycine cleavage system H protein (lipoate-binding)	JGI		ISS
PTHR11715	Panther	GLYCINE CLEAVAGE SYSTEM H PROTEIN	JGI		ISS
PF01597	PFAM	Glycine cleavage H-protein	JGI		ISS
UniRef100_Q42442	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: H-protein n=2 Tax=Flaveria RepID=Q42442_FLAPR	SoyBase	E_val: 4.00E-99	ISS
UniRef100_UPI0001D62D51	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D62D51 related cluster n=1 Tax=unknown RepID=UPI0001D62D51	SoyBase	E_val: 4.00E-116	ISS

Expression Patterns of Glyma11g04530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04530 not represented in the dataset	Glyma11g04530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04530

Paralog	Evidence	Comments
Glyma01g40810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g042200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g04530

Limit To All Plant Sequences

>Glyma11g04530.2   sequence type=transcript   gene model=Glyma11g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACGAAAGAATAATTAATTAGCTTTTAGAAAAGAAAGAAAAACGGGAGTGCTGATTTTGATTCATTAGCGGATTGTTTAATTGAAATAGCAACAAGTTTAGCCTTGATTTTTTTTGTAAGGTTAGGCGAAGGATAATAAAAAACATAAGGCAGAACAAAAAGAGGATGAGGCATTCGCTGCCCACCATTCATCGAAGATAAACTTTGAAAAACCATATATGAAGAGCTCCATCTTATTGTTTCAGTGATATATTAATAATAACCAAAACAGCAGAGAGAAGAGAAGGGCTACACAAACACAATCTCTAATGGCACTCAGGATGTGGGCTTCTTCCACTGCCAATGCACTCAAACTCTCTTCTGTCTCCAGACCTCATCTCTTGCCTCCTTTTTCTTTCTCCAGATGCTTATCTTCCGTCTTGGATGGACTTAAGTACGCTGATTCACATGAATGGGTCAAGCACGAAGGCTCAGTCGCCACCATTGGTATCACTGACCATGCCCAGGACCATCTTGGAGAGGTTGTGTATGTGGAGCTGCCAGAACCAGGTGGCACAGTTTCCAAGAAGTCTGGCTTCGGAGCCGTTGAAAGTGTTAAAGCAACAAGTGATATAAACTCTCCAATCTCGGGGGAGATCGTTGAGGTTAACAAAAAGCTCACAGAAACGCCTGGCCTGGTGATCAATTCTAACCCTTACCCTATATCTCTGTACTATATATATATATTTGGTCTAAGGAGGACTTTTGTTGCAAAAAGCTAAAAAAAATTCAAGACCTGCGTGAGGTTACTTATTACCATGCACAGTTAGGGTAACAATATTTACACTATCAACAAATAAGAAATTATTTTAGGTATAACATTTAAAGTATTAATTATAAGAGTCAAAAAAATTATGGTACATATCAGTTTTTAATTGATTGACATTGTAAAAATCTCACACTATGGGTGCATATACTATTTACTCTTATGCATGACTATTTATTTTGATATTGAATTGAATTACAGTGTTGATTTGCCTTGTCTTCTAATCCGCAGTTTATATACAGCTCATATTTATTTTTCTACTTTTCCCACTTTAAGGTCAACTCAAGCCCATACGAAGATGGATGGATGATCAAAGTAAAGCCAAGCGATCCATCTGAATTAGATTCCTTGATGGGTCCAAAGGAGTACACAAAATTTTGTGAGGAAGAAGATGCAAGTCATTAAAGTTTGAATTGAATTGGCTCCTGCAGTTATGTGTGGGACTGACTGTTCTTCATATGTTTATGATCTTATTACCTTCTGAACAGTTTTTTAATATGCAACAGAACTGTTTCTTTCCATTTTTCCTTCCCCTGCTATTGTCTCTTGTCACCGACACTTCAGTGTGTCTACATTCTAATTTCTTTAATAAAAATATTTTTATTAAAGATAACTATTTTGTCAATATAATTACTGTGATTAATATTATTTTTTTTTGGGTAAGGAA

Coding sequences of Glyma11g04530

Limit To All Plant Sequences

>Glyma11g04530.1   sequence type=CDS   gene model=Glyma11g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCAGGATGTGGGCTTCTTCCACTGCCAATGCACTCAAACTCTCTTCTGTCTCCAGACCTCATCTCTTGCCTCCTTTTTCTTTCTCCAGATGCTTATCTTCCGTCTTGGATGGACTTAAGTACGCTGATTCACATGAATGGGTCAAGCACGAAGGCTCAGTCGCCACCATTGGTATCACTGACCATGCCCAGGACCATCTTGGAGAGGTTGTGTATGTGGAGCTGCCAGAACCAGGTGGCACAGTTTCCAAGAAGTCTGGCTTCGGAGCCGTTGAAAGTGTTAAAGCAACAAGTGATATAAACTCTCCAATCTCGGGGGAGATCGTTGAGGTTAACAAAAAGCTCACAGAAACGCCTGGCCTGGTCAACTCAAGCCCATACGAAGATGGATGGATGATCAAAGTAAAGCCAAGCGATCCATCTGAATTAGATTCCTTGATGGGTCCAAAGGAGTACACAAAATTTTGTGAGGAAGAAGATGCAAGTCATTAA

>Glyma11g04530.2   sequence type=CDS   gene model=Glyma11g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCAGGATGTGGGCTTCTTCCACTGCCAATGCACTCAAACTCTCTTCTGTCTCCAGACCTCATCTCTTGCCTCCTTTTTCTTTCTCCAGATGCTTATCTTCCGTCTTGGATGGACTTAAGTACGCTGATTCACATGAATGGGTCAAGCACGAAGGCTCAGTCGCCACCATTGGTATCACTGACCATGCCCAGGACCATCTTGGAGAGGTTGTGTATGTGGAGCTGCCAGAACCAGGTGGCACAGTTTCCAAGAAGTCTGGCTTCGGAGCCGTTGAAAGTGTTAAAGCAACAAGTGATATAAACTCTCCAATCTCGGGGGAGATCGTTGAGGTTAACAAAAAGCTCACAGAAACGCCTGGCCTGGTGATCAATTCTAACCCTTACCCTATATCTCTGTACTATATATATATATTTGGTCTAAGGAGGACTTTTGTTGCAAAAAGCTAA

Predicted protein sequences of Glyma11g04530

Limit To All Plant Sequences

>Glyma11g04530.1   sequence type=predicted peptide   gene model=Glyma11g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRMWASSTANALKLSSVSRPHLLPPFSFSRCLSSVLDGLKYADSHEWVKHEGSVATIGITDHAQDHLGEVVYVELPEPGGTVSKKSGFGAVESVKATSDINSPISGEIVEVNKKLTETPGLVNSSPYEDGWMIKVKPSDPSELDSLMGPKEYTKFCEEEDASH*

>Glyma11g04530.2   sequence type=predicted peptide   gene model=Glyma11g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRMWASSTANALKLSSVSRPHLLPPFSFSRCLSSVLDGLKYADSHEWVKHEGSVATIGITDHAQDHLGEVVYVELPEPGGTVSKKSGFGAVESVKATSDINSPISGEIVEVNKKLTETPGLVINSNPYPISLYYIYIFGLRRTFVAKS*

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