SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32400 | AT | Annotation by Michelle Graham. TAIR10: tobamovirus multiplication 2A | chr1:11689393-11690873 REVERSE LENGTH=280 | SoyBase | E_val: 1.00E-124 | ISS |
| GO:0046786 | GO-bp | Annotation by Michelle Graham. GO Biological Process: viral replication complex formation and maintenance | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR19282 | Panther | TETRASPANIN | JGI | ISS | |
| PTHR19282:SF69 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00335 | PFAM | Tetraspanin family | JGI | ISS | |
| UniRef100_G7JZV0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GMFP4 n=2 Tax=Medicago truncatula RepID=G7JZV0_MEDTR | SoyBase | E_val: 8.00E-162 | ISS |
| UniRef100_I1LGZ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGZ4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g04450 not represented in the dataset |
Glyma11g04450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g40890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g041400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g04450.1 sequence type=CDS gene model=Glyma11g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATGTAGGGGATGCTGGGAATGCCTTTTGAAGCTTTTTAACTTCATATTGACCCTCACTGGTCTTGCCATTGTGGGCTATGGAATCTATCTTTTTGTTGAATTCTCTAAAGCTTCAGATGATGACAACATGCCGGCAATTTCTCCTGTAAGCGATGATTCTTCTCTGATTCAACTTGGCCGGCCTGTGCTTATGGCCGTGTCTCTATCCAACGACTTTTTTGATAACTTGCCCCGTGCTTGGTTTATTTACTTATTTATTGGTATTGGAGTGGTTCTCTTTCTTATTTCTTGTTTTGGTTGTATTGGAGCTGCAGCACGAAATGGATGCTGCCTGAGCTGTTATTCAATTTTGGTGGCATTATTGATCTTGGTAGAGCTGGGATGTGCAGCCTTTATATTCTTTGACAAAAACTGGAAAGAACAAATACCAACTGACAAAACTGGAGAGTTTGATGCGATATATGGATTTCTGATTGAGAATTGGAATATCATGAAATGGGTTGCTCTTGGAATTGTTATCTTTGAGGCCCTTCTTTTCCTGTTAGCCCTTATTGTTAGGGCTGCAAATAGGCCAGCAGATTATGATAGTGATGAGGAGTTCATTAATCCAAGGCAGCAAGTACAACAGCCATTGCTCAACAGACTACCAGCAGGCCCAGCAACAGGGATACCGGTTGCTGGAACAATTGACCAGCGTCCAAGCAGAAATGATGCATGGAGTACACGGATGAGGGAGAAGTATGGGCTTGATACTTCAGAATTTACATACAACCCATCTGAGTCTAACAGGTTCCAACAAGTAAACTCACAGCCAACTGAAGAAAAGAGCCGCTGCGCTATAATGTGA
>Glyma11g04450.1 sequence type=predicted peptide gene model=Glyma11g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACRGCWECLLKLFNFILTLTGLAIVGYGIYLFVEFSKASDDDNMPAISPVSDDSSLIQLGRPVLMAVSLSNDFFDNLPRAWFIYLFIGIGVVLFLISCFGCIGAAARNGCCLSCYSILVALLILVELGCAAFIFFDKNWKEQIPTDKTGEFDAIYGFLIENWNIMKWVALGIVIFEALLFLLALIVRAANRPADYDSDEEFINPRQQVQQPLLNRLPAGPATGIPVAGTIDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESNRFQQVNSQPTEEKSRCAIM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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