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Report for Sequence Feature Glyma11g04441

Feature Type:gene_model
Chromosome:Gm11
Start:3006599
stop:3014923
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g04441
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18020AT Annotation by Michelle Graham. TAIR10: CheY-like two-component responsive regulator family protein | chr4:10003738-10006682 REVERSE LENGTH=535 SoyBaseE_val: 6.00E-140ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000156GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF00072PFAM Response regulator receiver domain JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_G7JZU4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator-like protein n=1 Tax=Medicago truncatula RepID=G7JZU4_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233CCE1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CCE1 related cluster n=1 Tax=unknown RepID=UPI000233CCE1 SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g04441
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04441 not represented in the dataset
Glyma11g04441 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04441
ParalogEvidenceComments
Glyma01g40900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04441 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g041300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g04441
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g04441
>Glyma11g04441.1   sequence type=CDS   gene model=Glyma11g04441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAGGGACTTAGAGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAACAACTTGAGGCCATGGACTATAAGGTTTCCACTTTCTACGACGAGAATGAAGCCTTGTCAGCACTCTCAAGTAGTCCTAAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGGACCAGTGTCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAGAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATTCTGGGGAAAATGTCCTTTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCTCCAAACAGACATTGGACAAGATAAAAGTAGGATTTCAATTGATTTAGAGAATGTGTCGAGGTTTAGTGATAATGACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCTCCGTCAACCCCTCAATTAAAGCAGGGGACAAGGTTACTGGATGATGGAGATTGCCATGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATAGGGAATGTAAATCTGTCGAAACTTCATGTGGGAATTTGAATGCCGAAAGTTCTCCTCAGCCAAGGGAACCTGATAAGACTCTGATTAGGGAGGAAGATGATTTTGCCAATGTTTCCAAGGGTGAGAGCGCTGTTTCACTGAATCCACATAATAAAAAGTTTCTCAGCAATGCCGATGGTAATACATCTCCAAATAAAACGGGTGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGGTGAAAGTAGACTGGACACCTGAGCTGCATAAAAAATTTGTAAAGGCTGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCCAGGGAAGAAGATCGGAAATGGCATAATCAAGGGGATGCAATGCAAAGGAACTATTATATGCAAAGACCAATCATGGCATACCCTCCATATCATTCACATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGCAGTCAAACAGCCGGTGTACAGATTTGGGGCCATCCTGGTTATCCCATGTGGCATCCTACAGAAAGTTGGCACTGGAAGCCTTATCCGGGGGTGCATGTGGATGCTTGGGGATGCCCGTTGGTGCCACCTCCTCAAGCTCCTTGTTTTCCCTACAATCAAAATACACCTGGATTGCACAATCCTAAAGCAGTTGACTATAGATTCAGCATGCCACGAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTAGTGAAGGAAGCAATGAGCCAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAACTCTCCAAACAAGGCATACCCAGCATCCCTCTTGGCAACAAGGGTTCTTCTACTCCTAAACCCCGTCGAGATGTACGACCGACCCCGCCACCGGGTCCCACATAG
Predicted protein sequences of Glyma11g04441
>Glyma11g04441.1   sequence type=predicted peptide   gene model=Glyma11g04441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCTANDLQGWKDFPKGLRVLLLEGDSSSAAEIREQLEAMDYKVSTFYDENEALSALSSSPKGFHVAIVEVSTSCSLGGFKFLENAKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNSGENVLSESLKPVKESVESMLQLQTDIGQDKSRISIDLENVSRFSDNDHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHEQTNCSTEKESGEHDRECKSVETSCGNLNAESSPQPREPDKTLIREEDDFANVSKGESAVSLNPHNKKFLSNADGNTSPNKTGVLNDSCEIKANRKKVKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPREEDRKWHNQGDAMQRNYYMQRPIMAYPPYHSHHTLSPAPIYPMWGQPGSQTAGVQIWGHPGYPMWHPTESWHWKPYPGVHVDAWGCPLVPPPQAPCFPYNQNTPGLHNPKAVDYRFSMPRSSFEHHPAEEVVDKVVKEAMSQPWLPLPLGLKPPSMDSVLAELSKQGIPSIPLGNKGSSTPKPRRDVRPTPPPGPT*






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