Glyma11g04350 - SoyBase

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Report for Sequence Feature Glyma11g04350

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2968525
stop:	2970406
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07615	AT	Annotation by Michelle Graham. TAIR10: GTP-binding protein Obg/CgtA \| chr1:2342277-2344200 REVERSE LENGTH=493	SoyBase	E_val: 5.00E-86	ISS
PTHR11702	Panther	DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED	JGI		ISS
PTHR11702:SF3	Panther	GTP-BINDING PROTEIN, GTP1/OBG-FAMILY	JGI		ISS
PF01926	PFAM	GTPase of unknown function	JGI		ISS
UniRef100_G7I2N7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GTPase obg n=1 Tax=Medicago truncatula RepID=G7I2N7_MEDTR	SoyBase	E_val: 2.00E-126	ISS
UniRef100_I1LGX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGX5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g04350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma11g04350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g04350

Limit To All Plant Sequences

>Glyma11g04350.1   sequence type=CDS   gene model=Glyma11g04350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGACCAGTGTAAAATGTTTGCAAAAGCAGGTGATGGAGGTAATGGTTGTTCTATCTTGCGCAAGGGAAGATCTGATGATTTGTTGTTGCAATCATTTTTTATTTTTTATAATGTAATTGTTGAGCAGTTTGAAATGTGCTATCACGAGTGGCAATGGGGGGAGAGAGTTTGGGACTTCAGTGGTTTGCAGCATCACCTGATTGAAAGGAGGACCTGGATCATAAAAAATGTTGATGGTAGCAGGGGTGCTGATAAGAACTGCAAGTTAACCGCGTGTGTATCGATTGGCACTGTACTTCATCTCGTTAATGGTGATATTCCATCTGTTGTCAAAACTCAATCCTCAACAGATGTAGACCCTTGGGATATTCCCGGAGCACTTGTTGATGATGTTCCTGACCCTAGCAATGTCAAAGCAATACGAATTACTTGGTGCTCCTCATCACAAGATGAAGAAACAGATGTTAAGAAATCTGAAAAATCAAGACAAGTTGCATCAACAGATGTATTTTCTCAACTTTCCACTTCTAATGGAGCTCCTGAATTTGGAACAGAGGATATAGGAGAGAAACAAGAGATACTATACAATGTTGCTGAGTTAACAGAAGAAGGTCAACAAATTGTCATTGCTCATGGAGGAGAGGGTGGTCTGGGCAATGTGTCTTGTTCCAAAGATTCAAGGAAGCCTGTGACTGTTCAGGACCCTGACAGTGATCTCTCCTCTCTGCATGCAGTATTGCTGATCACTTTACTTGGGGCTATATCAAGGGCTAAGCCTGCTGTTGGTGACTATGCCTTCACTACTCTTAGGCCAAATTTGGGGAATCTAGACTATGATGATCTCTCAATAACTGTGGCTGATATTCCTGGACTTATAAAAGGTGCACACCAAAATCATGGACTCGGACATGCATTTCTGGGCAACACAAAATGCACAAAGGTTCTTGCTTATGTGGGAATTCCACCATGGGAACAGCTGAGAAACTTAATTCTAGAGCTAGAGTACCATCAGGACGGTTTATCCAATCGGCCATCCTTGATAGTTGCAAATAAGACTGATGAGGAAGGTGCAGATGAAGTGTATAAAGAGTTAAAGAGAAAGGGTCCAGGGTGTTCCCATCTTTCCTGTGTGTACTGTTTTGGGGGAAGGGATAGCAGATCTTAA

Predicted protein sequences of Glyma11g04350

Limit To All Plant Sequences

>Glyma11g04350.1   sequence type=predicted peptide   gene model=Glyma11g04350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDQCKMFAKAGDGGNGCSILRKGRSDDLLLQSFFIFYNVIVEQFEMCYHEWQWGERVWDFSGLQHHLIERRTWIIKNVDGSRGADKNCKLTACVSIGTVLHLVNGDIPSVVKTQSSTDVDPWDIPGALVDDVPDPSNVKAIRITWCSSSQDEETDVKKSEKSRQVASTDVFSQLSTSNGAPEFGTEDIGEKQEILYNVAELTEEGQQIVIAHGGEGGLGNVSCSKDSRKPVTVQDPDSDLSSLHAVLLITLLGAISRAKPAVGDYAFTTLRPNLGNLDYDDLSITVADIPGLIKGAHQNHGLGHAFLGNTKCTKVLAYVGIPPWEQLRNLILELEYHQDGLSNRPSLIVANKTDEEGADEVYKELKRKGPGCSHLSCVYCFGGRDSRS*

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