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Report for Sequence Feature Glyma11g04320

Feature Type:gene_model
Chromosome:Gm11
Start:2956727
stop:2958721
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g04320
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G32710AT Annotation by Michelle Graham. TAIR10: Cytochrome c oxidase, subunit Vib family protein | chr1:11833113-11833706 FORWARD LENGTH=134 SoyBaseE_val: 5.00E-30ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004129GO-mf Annotation by Michelle Graham. GO Molecular Function: cytochrome-c oxidase activity SoyBaseN/AISS
KOG3057 KOG Cytochrome c oxidase, subunit VIb/COX12 JGI ISS
PTHR11387Panther CYTOCHROME C OXIDASE POLYPEPTIDE VIB JGI ISS
PTHR11387:SF10Panther CYTOCHROME C OXIDASE SUBUNIT VIB FAMILY JGI ISS
PF02297PFAM Cytochrome oxidase c subunit VIb JGI ISS
UniRef100_B9SS20UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome C oxidase polypeptide vib, putative n=1 Tax=Ricinus communis RepID=B9SS20_RICCO SoyBaseE_val: 2.00E-36ISS
UniRef100_I1LGX3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGX3_SOYBN SoyBaseE_val: 8.00E-94ISS

Expression Patterns of Glyma11g04320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04320 not represented in the dataset
Glyma11g04320 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g04320 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g040300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g04320
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g04320
>Glyma11g04320.1   sequence type=CDS   gene model=Glyma11g04320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGCAGCGCAGGTAGATCCACATGACAAAATGAGAGCCAGAGACGTGAACAAAGTGGCTCGGGGTGAACAAGCTCCAAGGCCAGCTCATGAATTTGGCACCGTTTCTCCACCCCCTCCTCCCTCTTCAACCCACAGTATTGATACCAAGAGGAACAAAAAGGATGAAAAGCCAAGCATAGCTGAAAACGGTGCAGAATTAGCAAACAGTACTGATTATAAAACGCGTCAATGTTATGTAAAATATGTGGAGTATAACAGATGCATTCAGCAGAAGGGCGAAAAGGCAACCGATTGCGAGAAACTTGGCACGCATTTTAGGTCCTTCTGTCCAACCGAATGGATTGCTGAATGGGATAAAGAAAGAGAAGAGGGGAAATTCCCTGCAGAAATATAG
Predicted protein sequences of Glyma11g04320
>Glyma11g04320.1   sequence type=predicted peptide   gene model=Glyma11g04320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAAQVDPHDKMRARDVNKVARGEQAPRPAHEFGTVSPPPPPSSTHSIDTKRNKKDEKPSIAENGAELANSTDYKTRQCYVKYVEYNRCIQQKGEKATDCEKLGTHFRSFCPTEWIAEWDKEREEGKFPAEI*






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