SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47010 | AT | Annotation by Michelle Graham. TAIR10: RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254 | SoyBase | E_val: 0 | ISS |
| GO:0000184 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009755 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
| GO:0000932 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003724 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA helicase activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1802 | KOG | RNA helicase nonsense mRNA reducing factor (pNORF1) | JGI | ISS | |
| PTHR10887 | Panther | DNA2/NAM7 HELICASE FAMILY | JGI | ISS | |
| PTHR10887:SF26 | Panther | MOV-10 | JGI | ISS | |
| PF04851 | PFAM | Type III restriction enzyme, res subunit | JGI | ISS | |
| PF09416 | PFAM | RNA helicase (UPF2 interacting domain) | JGI | ISS | |
| UniRef100_G7JYP8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Regulator of nonsense transcripts-like protein n=1 Tax=Medicago truncatula RepID=G7JYP8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LGX2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGX2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma11g04310 not represented in the dataset |
Glyma11g04310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g41110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g040200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g04310.1 sequence type=CDS gene model=Glyma11g04310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTCGCAACAGAACAATCTTTTCGAGACCGCTTCGCAACCCGACACCGGCAACGACGCCTACACCTTTCTCGAGTTCAACACGCAGGGCGAGGATTTCGACTATCCCGAGTTCCGCGACCCGATTAGGTCGCCGGTTGCGTGGCCAACGCCGTCTGATTCGCTCGCGGACCCGTCGGAGCGAGGCGGCGGCGGGGGAGGCGGTTCTGATCACCAATCAGATACCTCGCCTGTCTCCGCGGCTCCCGGGAGTGCCACAAAGGGCGGCCGGTCGGGGAGCGGTGGTGGCGGGAACAGCAGCCAGATGGTGGATGCGCTCGCGGCGGGGATGAGCGGATTGAATTTCGAGGACACCGGTGATGATGATAACTATGAGTATGGGAAAGGGGATTTCACTGAACACGCTTGCCGGTATTGCGGGGTTTCCAATCCCGCGTGTGTTGTGAGGTGCAATGTGCCTTCTTGTCGCAAGTGGTTCTGTAATTCTCGGGGGAACACTTCTGGATCGCATATCGTCAATCACCTGGTTCGGGCTAAACACAAGGAAGTCTGCCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAATTGTGGATGTCGTAATGTGTTTCTTCTTGGATTTATTTCTGCAAAGACGGAAAGTGTAGTCGTCCTTCTTTGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCTCGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCCGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCTCCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAGGAATCACAAAGCAAGGACAATGTCACTATCCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTATTTCCAAAGGAAGATAACGAGTTGCGGCTTGTGCCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCACGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCTAATCAGGGGGTTCCAGTTGATGTTAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGTTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTTAGTGGGTATATTTACCATCACTTATTGGGTCATGAAGTTGAGGTTCAAATGGTGCGTAATGCCCTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCAGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTGCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACCGTAACATCTGCAGCACTTGTATATCACATGGCCAAGCAAGGCCAGGGGCAGGTTTTGGTTTGTGCTCCCAGTAATGTAGCTGTGGACCAGCTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGCGCAAAGTCAAGGGAAGCTGTGAGTTCTCCCGTTGAGCATTTAACTCTCCACTATCAGGTTCGACATCTTGACACATCAGACAAGAGCGAACTTCATAAGTTACAACAGCTGAAGGATGAACAAGGCGAACTTTCCAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACAGAAAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCCACTCAAGCAACTGAACCCGAGTGCCTTATACCCTTGGTTCTTGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCCCGTGCTGGGTTAGCACAGTCACTTTTTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTCAGTATCGTATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGCTTCTATGAAGGCACCCTGCAAAATGGAGTCACTGTTAATGAAAGACAATCTTCCGGAATTGATTTTCCTTGGCCAGTGCCAAACCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACACCTTATGAGGGGCAAAGGGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAGCTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTGTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGATTCCTGAATGATCCTAGGAGGCTCAACGTTGCTTTGACACGAGCAAGATATGGCATTGTTATTTTGGGAAACCCTAAAGTTTTGAGCAAGCAGCCTCTATGGAATAGTTTATTGACTCACTACAAGGAGCATGAGTGCTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAAAGTATGGTTCAGTTCCAGAAACCCAAGAAGATTTACAATGAACGAAGGCTTTTTTATGGGGGTGGACCTGGAATTGCATCTAATGATAATTTTGGTAACGTTGGATCTGGTGCTGGCACAAGTTCAGATCGGAGGAGCAGTCGAGGAAGGGGATCTTATATACCTCCTGGTCCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGATATCCTCCTGTGCCAAGGGTTCCCTTGCCTCATTTTCATGGTGGTCCCCAATCTCAACCATATGCCATTCCATCTCGTGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCATCTCCAGGGAGTCGAGGTTTTGGGGCTGGGAGAGGTAATTCTGGTGCTCCTCCAATTGGCAATCATCTACCTCATCAACAAGGCACCCAACAGCCTATTGGATCTACATTTAACTTCCCTGCTCTAGAGAATCCCAACAGCCAGCCATCTGTTGGTGGTCCATTATCCCAACCTGGGTTTGCCAACAATATGCATGTTCAAGGGGCTGGCCAATCATTTCGTGATCAATTTTCTATGCCTGGAATGTCCCAGGACTTCTTGGGCGATGACTTCAAAAGCCAGGGATCTCATGTTCCGTATAATGTCACTGATTTCTCTACGCAGGCTTCTCAAAGTGGATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAATTTTCTTAACCAGAATTCTCAAGCTGGATATTCTCGCTTTGGTTCTGGAAACGACTTTATGTCACAGGACTACATGGGCCATGGATCACAAGGCCTTTTCACTCAGGTGGGGTTCAGTGATCCCTTGCAAGATGATGCAACACAGAGCCATTTCAGTGTGGCAAATGCCAACCCTCTTCAGTCCCAGATGAATTCTCTTTACTCCCAACCTTTTGCTCACTACAACACACAGCCGCTTAACATGCAGGCTACCCAACAGCAGCCTCAGGCTCAGAACTCCCAAAATCAGAAAATCCACTATAACGTTTGA
>Glyma11g04310.1 sequence type=predicted peptide gene model=Glyma11g04310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPSERGGGGGGGSDHQSDTSPVSAAPGSATKGGRSGSGGGGNSSQMVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIASNDNFGNVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPPVPRVPLPHFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPPIGNHLPHQQGTQQPIGSTFNFPALENPNSQPSVGGPLSQPGFANNMHVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFSDPLQDDATQSHFSVANANPLQSQMNSLYSQPFAHYNTQPLNMQATQQQPQAQNSQNQKIHYNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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