Glyma11g04301 - SoyBase

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Report for Sequence Feature Glyma11g04301

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2936058
stop:	2938598
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04301

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22740	AT	Annotation by Michelle Graham. TAIR10: SU(VAR)3-9 homolog 6 \| chr2:9664256-9666628 REVERSE LENGTH=790	SoyBase	E_val: 3.00E-72	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0008327	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyl-CpG binding	SoyBase	N/A	ISS
GO:0010428	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyl-CpNpG binding	SoyBase	N/A	ISS
GO:0010429	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyl-CpNpN binding	SoyBase	N/A	ISS
GO:0018024	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone-lysine N-methyltransferase activity	SoyBase	N/A	ISS
GO:0042393	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone binding	SoyBase	N/A	ISS
PTHR22884	Panther	SET DOMAIN PROTEINS	JGI		ISS
PTHR22884:SF114	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02182	PFAM	YDG/SRA domain	JGI		ISS
UniRef100_G7JYL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 n=1 Tax=Medicago truncatula RepID=G7JYL0_MEDTR	SoyBase	E_val: 3.00E-116	ISS
UniRef100_I1LGX0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGX0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04301

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04301 not represented in the dataset	Glyma11g04301 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04301

Paralog	Evidence	Comments
Glyma01g41120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04301 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g040100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04301

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g04301

Limit To All Plant Sequences

>Glyma11g04301.2   sequence type=transcript   gene model=Glyma11g04301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAATTGAAAGAGTTTAGTTTTGGAAACACGCACACACTACTATACTAATTTCAGTAGGACTCTGGCATTCCATATCCATTTTTTCCAACTCTCCTCTGCGTTTTGAAGAAGTTGAAGGAGTTGGGAACAAACACAGGTTTTCTGATTTTCGTTTCTCTTCGCTCACTCTCGCACTCCGCTAAGAGTCATGACAATACTACTAGCTGTTCGTGATTTTCCGGATGGATGTGGAGCATTTCCGAAATTTGTTGAGGATATTAAGAATAAGAATGATCAACATTTAGCAAGAAGGTATCTTCCTCCACGAAAAGCTTCAGCTGTCAGAGACTTCCTTCCTTTATTTGGAGCATGCAATGACATGGATGTGTGTCAAGAAGAGGGGAAGAAAGTGGGTCTACAAAACCTCGCTGTAGATGACAACAATCAATTGAAAAAAGTATCAGCAGCTGATGATGTAAAAGAAGAAGTTAAGAGTAACATTCAAGATGACTATAGTCGCAAGAGAAATATTGTGGACTTCTATCAAAATCAAACTGATTCTGAAAGGAATGTTACTGAGGGACTGAAGGAGCTGCGTGCATTTGAAGAACCATCTTCTCAGATGAAAATGGCGCCGGAAAAAAAATTGCAGGTCTCATCATCAGACATGAAAGTGGTACTTGGTTTCATGGTTAAATCAGAATGTCCTTGGAGGTCTGGTCAAGTTTCCTCCCACTTTAAGTTGGGAGATGCTAAAAATGAAGACAAGAGAAAGAAAGTGGTTTCTTTTGCATTGCCTGACAGGTCTAGAAGAGCTATCAAGACTAAATGTAATTTTGGGCAGAAGCCTTTCAAAAAGAAGGCAAATTCTGCTTCTGAAGGTATGGGTGAATTAGAAATTTGGGGAAAGGAGGGCTGGCTTGACCCTGTTGAAAATAGTGAAGAATCACATGAGTTCGATGTAAATGTTACTCCCTCTTCTCATTCTAATTTCACTGGTGGTGATGAGAGTGACTCGGATGTGACCCGAGAAAAAGTGAGGGAAGCATTACGGTTGTTTCAAGTTGTTTGTAGAAGTCTTTTAGAGGAAGGAGAATCAAAGTCAAATGAACTAGGGAAAAGAAAGAGGGTTGATTTAATTGCTGCAAGGATTCTTAAGGACAATGGGATTCATGTTAACTCAGGCAAGAAGATACTGGGCCCTGTACCTGGGGTTGAAGTTGGTGATGAGTTTCAATATCGGGTGGAGCTTAATATAATTGGCCTTCATCTTCAGATTCAGGGTGGCATAGATTATGTGAAGCACAATGGTAAGATCCTTGCGACTAGTATTGTTGCTTCAGGTGGCTATGCTGATTATTTGGTCAATTCGGATGTCTTGGTATATTCAGGGCAGGGTGGGAATGTGATGAGCAATGACAAAAAACCTGAAGATCAGAAGCTCAAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATTCGCGGCTCTGAATCAATGGATGATAAATACAAGACATATGTATATGATGGGCTGTATGTGGTCGAGTCATATTGGCAGGACAGAGGATCACATGGGAAGCTGGTTTATAGGTTTCGCCTTAAAAGAATTCCTGGTCAAAAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAATAGTTGTTCAAGACAAGAGAAGATGGATGTGATTGTAAATGTACTAATGGATGCTTAGACTTGGAGAAATGTTCACGTTTCTTCTCACAAAACCTCTTTGTGGTTGCCCGGCTACCCTATGAATTAGAAATCTGTCTGATCTGAGGGTTTTCATGCATGCTTGTAATAAACTTTTTTTAGTAGAGATATATGTGTCTTTCACTATTCGAGTCACTACAAGCCTCAAAGTTTGACAAAGTTCTTTTTTTTAGAAGAGCTTGACAAATTTCTTCTATATTATATTCAGTTCAAACTCAACATCACTAATTAAGTGCAA

Coding sequences of Glyma11g04301

Limit To All Plant Sequences

>Glyma11g04301.1   sequence type=CDS   gene model=Glyma11g04301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAATACTACTAGCTGTTCGTGATTTTCCGGATGGATGTGGAGCATTTCCGAAATTTGTTGAGGATATTAAGAATAAGAATGATCAACATTTAGCAAGAAGGTATCTTCCTCCACGAAAAGCTTCAGCTGTCAGAGACTTCCTTCCTTTATTTGGAGCATGCAATGACATGGATGTGTGTCAAGAAGAGGGGAAGAAAGTGGGTCTACAAAACCTCGCTGTAGATGACAACAATCAATTGAAAAAAGTATCAGCAGCTGATGATGTAAAAGAAGAAGTTAAGAGTAACATTCAAGATGACTATAGTCGCAAGAGAAATATTGTGGACTTCTATCAAAATCAAACTGATTCTGAAAGGAATGTTACTGAGGGACTGAAGGAGCTGCGTGCATTTGAAGAACCATCTTCTCAGATGAAAATGGCGCCGGAAAAAAAATTGCAGGTCTCATCATCAGACATGAAAGTGGTACTTGGTTTCATGGTTAAATCAGAATGTCCTTGGAGGTCTGGTCAAGTTTCCTCCCACTTTAAGTTGGGAGATGCTAAAAATGAAGACAAGAGAAAGAAAGTGGTTTCTTTTGCATTGCCTGACAGGTCTAGAAGAGCTATCAAGACTAAATGTAATTTTGGGCAGAAGCCTTTCAAAAAGAAGGCAAATTCTGCTTCTGAAGGTATGGGTGAATTAGAAATTTGGGGAAAGGAGGGCTGGCTTGACCCTGTTGAAAATAGTGAAGAATCACATGAGTTCGATGTAAATGTTACTCCCTCTTCTCATTCTAATTTCACTGGTGGTGATGAGAGTGACTCGGATGTGACCCGAGAAAAAGTGAGGGAAGCATTACGGTTGTTTCAAGTTGTTTGTAGAAGTCTTTTAGAGGAAGGAGAATCAAAGTCAAATGAACTAGGGAAAAGAAAGAGGGTTGATTTAATTGCTGCAAGGATTCTTAAGGACAATGGGATTCATGTTAACTCAGGCAAGAAGATACTGGGCCCTGTACCTGGGGTTGAAGTTGGTGATGAGTTTCAATATCGGGTGGAGCTTAATATAATTGGCCTTCATCTTCAGATTCAGGGTGGCATAGATTATGTGAAGCACAATGGTAAGATCCTTGCGACTAGTATTGTTGCTTCAGGTGGCTATGCTGATTATTTGGTCAATTCGGATGTCTTGGTATATTCAGGGCAGGGTGGGAATGTGATGAGCAATGACAAAAAACCTGAAGATCAGAAGCTCAAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATTCGCGGCTCTGAATCAATGGATGATAAATACAAGACATATGTATATGATGGGCTGTATGTGGTCGAGTCATATTGGCAGGACAGAGGATCACATGGGAAGCTGGTTTATAGGTTTCGCCTTAAAAGAATTCCTGGTCAAAAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAATAG

>Glyma11g04301.2   sequence type=CDS   gene model=Glyma11g04301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAATACTACTAGCTGTTCGTGATTTTCCGGATGGATGTGGAGCATTTCCGAAATTTGTTGAGGATATTAAGAATAAGAATGATCAACATTTAGCAAGAAGGTATCTTCCTCCACGAAAAGCTTCAGCTGTCAGAGACTTCCTTCCTTTATTTGGAGCATGCAATGACATGGATGTGTGTCAAGAAGAGGGGAAGAAAGTGGGTCTACAAAACCTCGCTGTAGATGACAACAATCAATTGAAAAAAGTATCAGCAGCTGATGATGTAAAAGAAGAAGTTAAGAGTAACATTCAAGATGACTATAGTCGCAAGAGAAATATTGTGGACTTCTATCAAAATCAAACTGATTCTGAAAGGAATGTTACTGAGGGACTGAAGGAGCTGCGTGCATTTGAAGAACCATCTTCTCAGATGAAAATGGCGCCGGAAAAAAAATTGCAGGTCTCATCATCAGACATGAAAGTGGTACTTGGTTTCATGGTTAAATCAGAATGTCCTTGGAGGTCTGGTCAAGTTTCCTCCCACTTTAAGTTGGGAGATGCTAAAAATGAAGACAAGAGAAAGAAAGTGGTTTCTTTTGCATTGCCTGACAGGTCTAGAAGAGCTATCAAGACTAAATGTAATTTTGGGCAGAAGCCTTTCAAAAAGAAGGCAAATTCTGCTTCTGAAGGTATGGGTGAATTAGAAATTTGGGGAAAGGAGGGCTGGCTTGACCCTGTTGAAAATAGTGAAGAATCACATGAGTTCGATGTAAATGTTACTCCCTCTTCTCATTCTAATTTCACTGGTGGTGATGAGAGTGACTCGGATGTGACCCGAGAAAAAGTGAGGGAAGCATTACGGTTGTTTCAAGTTGTTTGTAGAAGTCTTTTAGAGGAAGGAGAATCAAAGTCAAATGAACTAGGGAAAAGAAAGAGGGTTGATTTAATTGCTGCAAGGATTCTTAAGGACAATGGGATTCATGTTAACTCAGGCAAGAAGATACTGGGCCCTGTACCTGGGGTTGAAGTTGGTGATGAGTTTCAATATCGGGTGGAGCTTAATATAATTGGCCTTCATCTTCAGATTCAGGGTGGCATAGATTATGTGAAGCACAATGGTAAGATCCTTGCGACTAGTATTGTTGCTTCAGGTGGCTATGCTGATTATTTGGTCAATTCGGATGTCTTGGTATATTCAGGGCAGGGTGGGAATGTGATGAGCAATGACAAAAAACCTGAAGATCAGAAGCTCAAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATTCGCGGCTCTGAATCAATGGATGATAAATACAAGACATATGTATATGATGGGCTGTATGTGGTCGAGTCATATTGGCAGGACAGAGGATCACATGGGAAGCTGGTTTATAGGTTTCGCCTTAAAAGAATTCCTGGTCAAAAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAATAG

Predicted protein sequences of Glyma11g04301

Limit To All Plant Sequences

>Glyma11g04301.1   sequence type=predicted peptide   gene model=Glyma11g04301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTILLAVRDFPDGCGAFPKFVEDIKNKNDQHLARRYLPPRKASAVRDFLPLFGACNDMDVCQEEGKKVGLQNLAVDDNNQLKKVSAADDVKEEVKSNIQDDYSRKRNIVDFYQNQTDSERNVTEGLKELRAFEEPSSQMKMAPEKKLQVSSSDMKVVLGFMVKSECPWRSGQVSSHFKLGDAKNEDKRKKVVSFALPDRSRRAIKTKCNFGQKPFKKKANSASEGMGELEIWGKEGWLDPVENSEESHEFDVNVTPSSHSNFTGGDESDSDVTREKVREALRLFQVVCRSLLEEGESKSNELGKRKRVDLIAARILKDNGIHVNSGKKILGPVPGVEVGDEFQYRVELNIIGLHLQIQGGIDYVKHNGKILATSIVASGGYADYLVNSDVLVYSGQGGNVMSNDKKPEDQKLKRGNLALKNSSEEKNPVRVIRGSESMDDKYKTYVYDGLYVVESYWQDRGSHGKLVYRFRLKRIPGQKLALKEVKKSK*

>Glyma11g04301.2   sequence type=predicted peptide   gene model=Glyma11g04301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTILLAVRDFPDGCGAFPKFVEDIKNKNDQHLARRYLPPRKASAVRDFLPLFGACNDMDVCQEEGKKVGLQNLAVDDNNQLKKVSAADDVKEEVKSNIQDDYSRKRNIVDFYQNQTDSERNVTEGLKELRAFEEPSSQMKMAPEKKLQVSSSDMKVVLGFMVKSECPWRSGQVSSHFKLGDAKNEDKRKKVVSFALPDRSRRAIKTKCNFGQKPFKKKANSASEGMGELEIWGKEGWLDPVENSEESHEFDVNVTPSSHSNFTGGDESDSDVTREKVREALRLFQVVCRSLLEEGESKSNELGKRKRVDLIAARILKDNGIHVNSGKKILGPVPGVEVGDEFQYRVELNIIGLHLQIQGGIDYVKHNGKILATSIVASGGYADYLVNSDVLVYSGQGGNVMSNDKKPEDQKLKRGNLALKNSSEEKNPVRVIRGSESMDDKYKTYVYDGLYVVESYWQDRGSHGKLVYRFRLKRIPGQKLALKEVKKSK*

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