SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47040 | AT | Annotation by Michelle Graham. TAIR10: lon protease 2 | chr5:19093356-19098678 REVERSE LENGTH=888 | SoyBase | E_val: 0 | ISS |
| GO:0006200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP catabolic process | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0006515 | GO-bp | Annotation by Michelle Graham. GO Biological Process: misfolded or incompletely synthesized protein catabolic process | SoyBase | N/A | ISS |
| GO:0016485 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein processing | SoyBase | N/A | ISS |
| GO:0016560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix, docking | SoyBase | N/A | ISS |
| GO:0038032 | GO-bp | Annotation by Michelle Graham. GO Biological Process: termination of G-protein coupled receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0005782 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal matrix | SoyBase | N/A | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0043233 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: organelle lumen | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004176 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008236 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PTHR10046 | Panther | ATP DEPENDENT LON PROTEASE FAMILY MEMBER | JGI | ISS | |
| PTHR10046:SF24 | Panther | PEROXISOMAL LON PROTEASE HOMOLOG 2 | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| PF02190 | PFAM | ATP-dependent protease La (LON) domain | JGI | ISS | |
| UniRef100_G7JYP5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lon protease homolog n=1 Tax=Medicago truncatula RepID=G7JYP5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LGW8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LGW8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g04280 not represented in the dataset |
Glyma11g04280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g41150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g04280.1 sequence type=CDS gene model=Glyma11g04280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAGAATTCAATTCCAGGGGGGTAGCTGCTCGAGCACTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGGAGAGTCACATATATTGTTGTTCTTGAAGGCCTGTGCAGATTTAGTGTCCAGGAACTAAGCACGAGAGGAACATACCATACTGCAAGGATCTCATCCCTTGAGATGACTAAGACTGAGATGGAACAGGTGGAGCAAGACCCAGATTTCATAATGTTATCTCGTCAATTTAAAGCAACTGCCATGGAGCTTATTTCTGTTCTGGAGCAGCTTGTTCTTAATCTAATTGAAACAAAAAACTGGTGGAATGACGAAAGTTCTTTTGGAGACTGTTGCAGTTCAAAGTTGGCTGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAAGAACAGATATCAATGTTGGATTCAGTTGACCCTAAAGTGAGGCTTTCAAAAGCAACAGAATTGGTTGATAGGCACTTACAGTCAATACGTGTAGCTGAAAAAATTACACAAAAGGTTGAAAGACAATTGTCAAAATCTCAAAAAGAATTTCTTCTTCGACAGCAGATGAGAACTATAAAAGAGGAACTTGGTGATAATGATGATGACGAGGATGACCTGGCTGCCCTGGAAAGAAAGATTCAAAGTGCAGGAATGCCAGAGAATATCTGGAAGCATGCTCACAGAGAATTAAGGAGACTCAAAAAAATGCAGCCTCAGCAACCAGGGTATAACAGTTCACGGGCTTACCTGGATCTTCTTGCTGATTTGCCATGGCAGAAGGCCAGCAGAGAGCTTGAACTGGACTTAAGAGCTGCACAGGAGCGCCTGGACACTGATCACTATGGTTTAGTGAAGGTCAAGCAACAGATAATCGAATACCTGGCTGTTCGCAAGCTTAAGTCAGATGCAAGGGACATCACTGGCATCTTCTATTGCTGCTGCTTTGGGCAGATTGAAGTTTTCAAGAGAGTAGCTGTTTGCAATCCTGTCATGTTGCTTGATGAAATTGACAAGACAGGGTCTGATGTTCGTAGAGATCCAGCTTCTTCATTGCTAGAGCCATTTGATCTATCCAAGGTAATTTTTGTGGCTACAGAAAATAGAGCGCAACCTATTCCTCCACCTCTCCTTGACAGGATGGAGGTCATTGAGCTTCCTGGATATACTGCTGAGGAAAAGCTCAAAATACATGGGTTGAGTTCTGAGTTTCTTCAGATTCCAGAG
>Glyma11g04280.1 sequence type=predicted peptide gene model=Glyma11g04280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high IEFNSRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYHTARISSLEMTKTEMEQVEQDPDFIMLSRQFKATAMELISVLEQLVLNLIETKNWWNDESSFGDCCSSKLADIFVASFEISFEEQISMLDSVDPKVRLSKATELVDRHLQSIRVAEKITQKVERQLSKSQKEFLLRQQMRTIKEELGDNDDDEDDLAALERKIQSAGMPENIWKHAHRELRRLKKMQPQQPGYNSSRAYLDLLADLPWQKASRELELDLRAAQERLDTDHYGLVKVKQQIIEYLAVRKLKSDARDITGIFYCCCFGQIEVFKRVAVCNPVMLLDEIDKTGSDVRRDPASSLLEPFDLSKVIFVATENRAQPIPPPLLDRMEVIELPGYTAEEKLKIHGLSSEFLQIPE
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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