Glyma11g04180 - SoyBase

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Report for Sequence Feature Glyma11g04180

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2777678
stop:	2781145
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47080	AT	Annotation by Michelle Graham. TAIR10: casein kinase II beta chain 1 \| chr5:19124969-19126397 REVERSE LENGTH=287	SoyBase	E_val: 1.00E-163	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0071900	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005956	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein kinase CK2 complex	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0019887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase regulator activity	SoyBase	N/A	ISS
KOG3092	KOG	Casein kinase II, beta subunit	JGI		ISS
PTHR11740	Panther	CASEIN KINASE II BETA CHAIN	JGI		ISS
PF01214	PFAM	Casein kinase II regulatory subunit	JGI		ISS
UniRef100_G7JYM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase II subunit beta-4 n=2 Tax=Medicago truncatula RepID=G7JYM7_MEDTR	SoyBase	E_val: 6.00E-177	ISS
UniRef100_I1LGW0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGW0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04180

Paralog	Evidence	Comments
Glyma01g41230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g039100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g04180

Limit To All Plant Sequences

>Glyma11g04180.1   sequence type=CDS   gene model=Glyma11g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAGAGAGCGAGGAGGCGTCGGATCCAAATCGGAGGTAACTTCCGTTGATCGGAAGCGAATCAATGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACATCCAGAGCCGCCGGCGCCATCAACGGCAAGGACCGCTCCTCCTCTTCCCTCTTAGCCGCCGCCAAGGACTCCCGCTCCGCCTCCGTCACCGCCCCTATCTCCAAGAATTCCAACGCTTCCGACGAGGAATCTGAAACAGACAGCGAGGAGTCTGATGTTAGTGGCTCCGACGGAGATGACACGTCGTGGATCTCGTGGTTCTGCAATTTGAGAGGAAATGAATTCTTCTGCGAGGTTGATGACGATTACATCCAGGACGACTTCAACCTCTGTGGATTGAGCAGTCAAGTGCCTTACTATGATTATGCTCTGGATTTGATTTTGGATGTTGAATCCTCTCATGGTGACATGTTTACCGAGGAACAGAATGAGTTAATTGAATCAGCAGCCGAGATGCTTTATGGTCTGATTCATGCCCGGTACATATTGACAAGCAAAGGAATGGCTGCAATGCTCGACAAGTACAAGAACTATGATTTTGGCAGATGCCCACGAGTTTACTGCTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCTAGGTCTAGTACTGTGAAAATATACTGCCCTCGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACTACGTTTCCTCATCTGTTCTTGATGACTTATGGACAACTAAAGCCACAGAAACCATCACAGAGCTATGTCCCGAGAGTTTTTGGCTTCAAACTTCACAAGCCCTGA

Predicted protein sequences of Glyma11g04180

Limit To All Plant Sequences

>Glyma11g04180.1   sequence type=predicted peptide   gene model=Glyma11g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRERGGVGSKSEVTSVDRKRINDVLDKQLERSSPSTSRAAGAINGKDRSSSSLLAAAKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP*

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