Glyma11g04170 - SoyBase

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Report for Sequence Feature Glyma11g04170

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2770691
stop:	2775598
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17620	AT	Annotation by Michelle Graham. TAIR10: glycine-rich protein \| chr4:9822005-9824859 FORWARD LENGTH=544	SoyBase	E_val: 0	ISS
GO:0006302	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1982	KOG	Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p	JGI		ISS
PTHR12395	Panther	DOM-3 RELATED	JGI		ISS
PTHR12395:SF9	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF08652	PFAM	RAI1 like	JGI		ISS
UniRef100_G7JYM5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dom3z-like protein n=2 Tax=Medicago truncatula RepID=G7JYM5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LGV9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGV9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04170

Paralog	Evidence	Comments
Glyma01g41250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g039000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g04170

Limit To All Plant Sequences

>Glyma11g04170.1   sequence type=CDS   gene model=Glyma11g04170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCACGGAGAAGGATCTATTCGGCGAAGATTCCGACAACGACAACGGGTCCCACTCCTCCGGTTCCTCTTCTTCTTCCTCCGCCGCTTCCTCTTCCTCATCATCCTCCGCCTCCTCTTCCGCCTCTTCCTCCAAAGCCAGCGACGCCGCCGCCGACTCCTCCTCCGCCAGCGGCAGCGCAAGCAGCGGCGCCGAAAACGACGACGAGAATGGCGACGTCGTAGATAGCACCAAAGTCCGCGCCCATCACCATCACGACTACGAAGACAAAGATCTGTTTGGCTCCGATAATGAAGATTACTGTAAAACCCTCGCTAGAAGTCCTTACCCCATTCCTGTATTGCCTGCCATCCGCAATGTGCATAATCAGGGTAGAGGGGGGTTTGGCCGTGGTCGTTGGCAAAATGATAGAGGAGCTGGCCTTCTTCCTCGTCCCGGACCTTATCCTCAGAGGCAGAATTTTGGGTATGGAAATAGGTTTCAGGATGGCCGCCATGACGAGCGATTTGTCTCTGAGTTGAAGCTTTCAAAAAGTGAAGAAACTCTATCAAGAAAGTGCATTGCTTTTCAGGAGCCTTGTGAAGTTGCCTGCTATAGTCGTGCAGAAGGCAGAGAAGTATACTTCGACGATCGTAGCTTGAGACTTTTTAAGCGCCATATCACTGAGGATGTTGGAGCTGATTTGAATGAAGGTTATGATACATACATTCCCAAAAAAGACTTAGGCTCACAGGGATTTGGTGATCTTCTTGCTTGCATTAGAGACAAAAATATCCCGCTTCAAAACATTCATTTTGTGACATTCCGTAACAATCTTAACAAGATACTGGCAACAGCTTATATCCGTCACGAGCCTTGGGAAATGGGAGTGCACAAAAGGAATGGTGTTGTCTATCTTGATGTGCACAAATTACCAGAAAAACCTCAAAGTGATTTGGATCGCAGGAGATGTTATGTAGGATATTGTTTTGAGAGCCTTGCAACTGAAGATCCTAATAGAGCAGATGGAGAGGGGATACATCATGTTGATGCCAATGTTGAATTTTGTGCTGTGATTAAGACAAAATTAGGAGCTCACCGCATCTTAATGGGTGCTGAGATGGATTGCTGTGATTCGACTAATGAGGGAAAGAGATTTTATGTGGAGTTAAAGACAAGTTGTGAGTTAAATTATCACACCGAGGAAAGATTCGAGAGGGAGAAACTGTTGAAGTTTTGGATTCAGTCATTTCTGGCTGGTGTTCCATATATTGTCATAGGATTTAGGGATGATGCAGGTCGTCTTGTTCGGACAGAAAGACTTAGAACCAAAGATATAACACAGAGAGTGAAAATGAAGAACTACTGGCAGGGAGGAGTCTGCTTGGCGTTTGCTGACGAGGTATTATGCTGGCTGTATGGAACAGTCAAAGAAGGTGAAGATTATATTTTGCAGTTTGCTCCACCTTTCAACCGATTGGAGCTTCTGCAATCCCAGTCTTGCCCAGATGTAATCACTAGTCATCTGGAGCTGTTGTGA

Predicted protein sequences of Glyma11g04170

Limit To All Plant Sequences

>Glyma11g04170.1   sequence type=predicted peptide   gene model=Glyma11g04170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFTEKDLFGEDSDNDNGSHSSGSSSSSSAASSSSSSSASSSASSSKASDAAADSSSASGSASSGAENDDENGDVVDSTKVRAHHHHDYEDKDLFGSDNEDYCKTLARSPYPIPVLPAIRNVHNQGRGGFGRGRWQNDRGAGLLPRPGPYPQRQNFGYGNRFQDGRHDERFVSELKLSKSEETLSRKCIAFQEPCEVACYSRAEGREVYFDDRSLRLFKRHITEDVGADLNEGYDTYIPKKDLGSQGFGDLLACIRDKNIPLQNIHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYLDVHKLPEKPQSDLDRRRCYVGYCFESLATEDPNRADGEGIHHVDANVEFCAVIKTKLGAHRILMGAEMDCCDSTNEGKRFYVELKTSCELNYHTEERFEREKLLKFWIQSFLAGVPYIVIGFRDDAGRLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKEGEDYILQFAPPFNRLELLQSQSCPDVITSHLELL*

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