Report for Sequence Feature Glyma11g04130
Feature Type: gene_model
Chromosome: Gm11
Start: 2751560
stop: 2753162
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g04130
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
PF06200 PFAM
tify domain
JGI ISS
PF09425 PFAM
Divergent CCT motif
JGI ISS
UniRef100_G7JYL9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein TIFY n=2 Tax=Medicago truncatula RepID=G7JYL9_MEDTR
SoyBase E_val: 1.00E-16 ISS
UniRef100_I1LGV3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGV3_SOYBN
SoyBase E_val: 1.00E-149 ISS
Expression Patterns of Glyma11g04130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g04130
Paralog Evidence Comments
Glyma01g41290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g04130 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g038600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g04130
Transcripts of Glyma11g04130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g04130.2 sequence type=transcript gene model=Glyma11g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACCATCTCATCACACTCACATCTCTTGTGCTCTCTCTTCAGTCTCTCCCACACACCCTTCTTCTTCAGCTGAGTTGTTTGTAATACAGCAAGATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAAGTTTCTTATCCTCCTTATCTCTTTGTAGAAGAGATTCCAAACATGGGAAATTCCAGTGTTGTGACCAAGGATGCTAGAGGTTCACAGCTGACAATCTTCTATGGTGGCCAAGTTCTTGTCTTCGATGATATTCAAGCTAAAAAAGCCAAGGACATCTTGTCTTTTGCCGGCAAGGGAATGTCTCAAAACCAGAACGATTATGCTAACACTTTCCCTGCTACAACTTCTGCTAATCCCACTAGACCATTTCCTTTTCTTATGAATATCATTCCAACCAGTGCCAACAATTCGGTTCAAGACCACCCTCAAGCACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGGTAAGTAGGCTGAGTCATGATACATTAACAAAAGTATACCTTCAAGTTTTCTTCTACATTTTGGTCTTTGTATTTTCTAATATGTGGGGGATTTGGTATTTGGTCTCTGCTTATTTCGAAATTGAAGTATAGGGTCAAGTATAAAATGTACCATATTTCAAAAATACAGTAGCTAAAATCACCATTTTTATAAATCTTGAGGGCCTGCAATACATTTTGCCTTTTTTGTTTAACTATACTGCTTTGGATCAATTGATTTATGTATTGTTAATGTTTCTGCAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCCAGCTGAATCCATGACATGGCTCACCTTGGCACCTAAATCACCACAACAAGACGAATCTGATTCCGATAGCAGCTCCAGCTTTGTGTTATTTTAGCTGTTGCTAATGGCTTACTATTATCATAATTAAGAGTGCAATTTTGGGCAAAAAAGTAATGTAAATGTAGTTTGGTTAGCATAGTTTTAGTAAAATATTGGAATCAATTCTTCTCAATTCTCAATGTCACATGTATTATATGTAAAATTTATGGTTAGGGTTATCTTTTTATAACCATAGTCTGTTTGTTATAGTTCAATTGGTTTCTACTAGTATGTGAGCCACATTTAACCAAATT
>Glyma11g04130.3 sequence type=transcript gene model=Glyma11g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTCGTGCTTTAATTCCACGTCTTTGTGACAATTTGTAGTTACAAAAATGAATATAAGGTTCAATCATCGATACCATCTCATCACACTCACATCTCTTGTGCTCTCTCTTCAGTCTCTCCCACACACCCTTCTTCTTCAGCTGAGTTGTTTGTAATACAGCAAGATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAAGTTTCTTATCCTCCTTATCTCTTTGTAGAAGAGATTCCAAACATGGGAAATTCCAGTGTTGTGACCAAGGATGCTAGAGGTTCACAGCTGACAATCTTCTATGGTGGCCAAGTTCTTGTCTTCGATGATATTCAAGCTAAAAAAGCCAAGGACATCTTGTCTTTTGCCGGCAAGGGAATGTCTCAAAACCAGAACGATTATGCTAACACTTTCCCTGCTACAACTTCTGCTAATCCCACTAGACCATTTCCTTTTCTTATGAATATCATTCCAACCAGTGCCAACAATTCGGTTCAAGACCACCCTCAAGCACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCCAGCTGAATCCATGACATGGCTCACCTTGGCACCTAAATCACCACAACAAGACGAATCTGATTCCGATAGCAGCTCCAGCTTTGTGTTATTTTAGCTGTTGCTAATGGCTTACTATTATCATAATTAAGAGTGCAATTTTGGGCAAAAAAGTAATGTAAATGTAGTTTGGTTAGCATAGTTTTAGTAAAATATTGGAATCAATTCTTCTCAATTCTCAATGTCACATGTATTATATGTAAAATTTATGGTTAGGGTTATCTTTTTATAACCATAGTCTGTTTGTTATAGTTCAATTGGTTTCTACTAGTATGTGAGCCACATTTAACCAAATTCCATCTTTCCACCTAATTCAGTTTTTCCTCTCAGGCGCTTGCATATCTTCTCTCAAACTATCCTAGTTCATGCCATGCAGCAGAAAATGAGGTAGATTGAGCTGCAATAAGAATAACAAATTGAACTAATTGA
Coding sequences of Glyma11g04130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g04130.1 sequence type=CDS gene model=Glyma11g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAAGTTTCTTATCCTCCTTATCTCTTTGTAGAAGAGATTCCAAACATGGGAAATTCCAGTGTTGTGACCAAGGATGCTAGAGGTTCACAGCTGACAATCTTCTATGGTGGCCAAGTTCTTGTCTTCGATGATATTCAAGCTAAAAAAGCCAAGGACATCTTGTCTTTTGCCGGCAAGGGAATGTCTCAAAACCAGAACGATTATGCTAACACTTTCCCTGCTACAACTTCTGCTAATCCCACTAGACCATTTCCTTTTCTTATGAATATCATTCCAACCAGTGCCAACAATTCGGTTCAAGACCACCCTCAAGCACCATCCAAACCTGTTATTTGTGGTAATTTTTTTGGATCTCTGATGTTTATTCAGAAGATGATGAGAGATTTGTGTGTCGGTTTATGTGATTCTGATCCATCGCGCTTTGTGTTCCTTTTTGTTCAGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCCAGCTGAATCCATGA
>Glyma11g04130.2 sequence type=CDS gene model=Glyma11g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAAGTTTCTTATCCTCCTTATCTCTTTGTAGAAGAGATTCCAAACATGGGAAATTCCAGTGTTGTGACCAAGGATGCTAGAGGTTCACAGCTGACAATCTTCTATGGTGGCCAAGTTCTTGTCTTCGATGATATTCAAGCTAAAAAAGCCAAGGACATCTTGTCTTTTGCCGGCAAGGGAATGTCTCAAAACCAGAACGATTATGCTAACACTTTCCCTGCTACAACTTCTGCTAATCCCACTAGACCATTTCCTTTTCTTATGAATATCATTCCAACCAGTGCCAACAATTCGGTTCAAGACCACCCTCAAGCACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGGTAA
>Glyma11g04130.3 sequence type=CDS gene model=Glyma11g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAAGTTTCTTATCCTCCTTATCTCTTTGTAGAAGAGATTCCAAACATGGGAAATTCCAGTGTTGTGACCAAGGATGCTAGAGGTTCACAGCTGACAATCTTCTATGGTGGCCAAGTTCTTGTCTTCGATGATATTCAAGCTAAAAAAGCCAAGGACATCTTGTCTTTTGCCGGCAAGGGAATGTCTCAAAACCAGAACGATTATGCTAACACTTTCCCTGCTACAACTTCTGCTAATCCCACTAGACCATTTCCTTTTCTTATGAATATCATTCCAACCAGTGCCAACAATTCGGTTCAAGACCACCCTCAAGCACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCCAGCTGAATCCATGACATGGCTCACCTTGGCACCTAAATCACCACAACAAGACGAATCTGATTCCGATAGCAGCTCCAGCTTTGTGTTATTTTAG
Predicted protein sequences of Glyma11g04130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g04130.1 sequence type=predicted peptide gene model=Glyma11g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNPWNMRTSKLLSQQVSYPPYLFVEEIPNMGNSSVVTKDARGSQLTIFYGGQVLVFDDIQAKKAKDILSFAGKGMSQNQNDYANTFPATTSANPTRPFPFLMNIIPTSANNSVQDHPQAPSKPVICGNFFGSLMFIQKMMRDLCVGLCDSDPSRFVFLFVQIYHWLGKLHFIGSWRKERIELLPEHHIKQAITWQPLISQLNP*
>Glyma11g04130.2 sequence type=predicted peptide gene model=Glyma11g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNPWNMRTSKLLSQQVSYPPYLFVEEIPNMGNSSVVTKDARGSQLTIFYGGQVLVFDDIQAKKAKDILSFAGKGMSQNQNDYANTFPATTSANPTRPFPFLMNIIPTSANNSVQDHPQAPSKPVICDLPLARKASLHRFLEKRKDR*
>Glyma11g04130.3 sequence type=predicted peptide gene model=Glyma11g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNPWNMRTSKLLSQQVSYPPYLFVEEIPNMGNSSVVTKDARGSQLTIFYGGQVLVFDDIQAKKAKDILSFAGKGMSQNQNDYANTFPATTSANPTRPFPFLMNIIPTSANNSVQDHPQAPSKPVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKPAESMTWLTLAPKSPQQDESDSDSSSSFVLF*