SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g04096

Feature Type:gene_model
Chromosome:Gm11
Start:2739047
stop:2741462
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g04096
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04770AT Annotation by Michelle Graham. TAIR10: cationic amino acid transporter 6 | chr5:1379118-1382304 FORWARD LENGTH=583 SoyBaseE_val: 2.00E-76ISS
GO:0003333GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transmembrane transport SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0015171GO-mf Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity SoyBaseN/AISS
PTHR11785Panther AMINO ACID TRANSPORTER JGI ISS
PTHR11785:SF53Panther TRYPTOPHAN PERMEASE JGI ISS
PF00324PFAM Amino acid permease JGI ISS
UniRef100_B9SZ12UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cationic amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9SZ12_RICCO SoyBaseE_val: 8.00E-128ISS
UniRef100_I1LGV0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LGV0_SOYBN SoyBaseE_val: 2.00E-159ISS

Expression Patterns of Glyma11g04096
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04096 not represented in the dataset
Glyma11g04096 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g04096 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g038400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g04096
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g04096
>Glyma11g04096.1   sequence type=CDS   gene model=Glyma11g04096   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAATACTCAACCTCAGCAGAGGAGCGAGATACTGTTTGTTGCTTCTTAGTTTTCCATGAAATTGAAGAACATCCAAGTAGAACAAACCATCCGATAAGGGACCTACGAGTTAAAAGACATTTAGTCCAATCAGAGTCACACCAATCAGATAGTTGCAGGTCACAATCCTTACATAACAAAACACTCTGTCCTATATTCCCTTTCAGAGGAGTTGTGAATGGAGCTGCCACAGTCTACTTTAGCTATATAGGCTATGACTCGGCTTCAACCTTGGCAGAGGAGATCAAAGATCCTTTTAAGAGCCTGCCTATTGGAATTATGGGTTCAATTCTCATAACCACCATACTTTATTGCTTAATGGCTCTATCTTTGGGTATGATGGCTCCTTACAACAAGTTAAGTAATAAAGCAACATTTTCAATCGCTTTTGCTAAGATTGGATGGATTTTGGGCATAGTTGCTTCTCTCTTAGTTGTGATGTTAGGCCAAGCTAGATACCTTTGTGTTATAGCAAGGGCCAGACTAGTGCTGTCTTGGTTTAATTATTCTTCTGGAGTTTGCACAGCATCCATTGCTCTATTCACTGAGCTTGGCATCATAATCGAGTTGGTCAACATCCGCACGCTCTTGGTGTTCTACTTGGTAGCCAATGCTCTGATATACCGTCGATATGTGATCACTAGCCACACCCCACCTATTCACACTCTCTTGTTCCAATTTCTCTTTTCACTTGGTGCTCTAGGCTTCTCCCTTTCATGGAAATTCAATCAGCAACAGTGGGGTCTCCCACTCTTTGGTGGGCTCATGATCACCATCACAGCTTTTTACCACCACAAGGTGCCTCATCATACCCATGCTGATGATGCTGATTGGTGTGTGCCATTCATGCCCTGGCCACCTGCCCTCTCCATCTTTCTCAACGTTTTCCTCATCACCACTCTAAAGCTCCTCTCTTTCCAAAGGTTTGCTATGTGGGCATGTTTCATTACCCTCTTCTATGTCCTCTATGGTGTTCACTCCACTTACCAAGCAGAAGAAGAAACTGAAATAGGGTCTAATCAACTGAATTCAAGCTCATCCAACCTACAAACTAAGGTAGAAGTTCAAGTGCTATAG
Predicted protein sequences of Glyma11g04096
>Glyma11g04096.1   sequence type=predicted peptide   gene model=Glyma11g04096   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQYSTSAEERDTVCCFLVFHEIEEHPSRTNHPIRDLRVKRHLVQSESHQSDSCRSQSLHNKTLCPIFPFRGVVNGAATVYFSYIGYDSASTLAEEIKDPFKSLPIGIMGSILITTILYCLMALSLGMMAPYNKLSNKATFSIAFAKIGWILGIVASLLVVMLGQARYLCVIARARLVLSWFNYSSGVCTASIALFTELGIIIELVNIRTLLVFYLVANALIYRRYVITSHTPPIHTLLFQFLFSLGALGFSLSWKFNQQQWGLPLFGGLMITITAFYHHKVPHHTHADDADWCVPFMPWPPALSIFLNVFLITTLKLLSFQRFAMWACFITLFYVLYGVHSTYQAEEETEIGSNQLNSSSSNLQTKVEVQVL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo