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Report for Sequence Feature Glyma11g04080

Feature Type:gene_model
Chromosome:Gm11
Start:2727373
stop:2729770
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g04080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17030AT Annotation by Michelle Graham. TAIR10: expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250 SoyBaseE_val: 4.00E-107ISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0009828GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening SoyBaseN/AISS
GO:0019953GO-bp Annotation by Michelle Graham. GO Biological Process: sexual reproduction SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
PF01357PFAM Pollen allergen JGI ISS
PF03330PFAM Rare lipoprotein A (RlpA)-like double-psi beta-barrel JGI ISS
UniRef100_B9SZ01UniRef Annotation by Michelle Graham. Most informative UniRef hit: Major pollen allergen Ory s 1, putative n=1 Tax=Ricinus communis RepID=B9SZ01_RICCO SoyBaseE_val: 3.00E-110ISS
UniRef100_I1LGU8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGU8_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma11g04080
LocusGene SymbolProtein Name
EXLB8 expansin-like B gene 8

Expression Patterns of Glyma11g04080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04080 not represented in the dataset
Glyma11g04080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04080
ParalogEvidenceComments
Glyma01g41330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g038300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g04080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g04080
>Glyma11g04080.1   sequence type=CDS   gene model=Glyma11g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTTAATTTTAAGTACCAACTTAGCATTATCTGTGTCACACTGCTCTTACCTGCCCTGCGTACCTCTCAGGACTCTTTTACATGCTCCAGAGCAACTTATTATGGTAGCACAGATTGTTATGGAAACCCAAGGGGAGCTTGTGGCTTTGGCGAATATGGAAAAACGGTAAACGATGGCAGTGTAGCAGGCGTGTCTTGGCTATGGAAGAATGGATCTGGCTGTGGAGCATGTTATCAGGTTAGGTGCAAAATACCCCAATTCTGCGATGAGAATGGAGCATACGTGGTGGTGACAGATTATGGCGAGGGAGACAGAACAGACTTCATAATGAGTCCACGTGCCTACTCAAGATTGGGAAGTAACGCAGATGCATCTGCAGAACTATTCAAATACGGTGTAGTGGATGTAGAATACAGAAGGGTCCCCTGTAGATACGGTGGCTATAACCTCTTGGTTAAGGTTCATGAACAGAGCAGAAACCCTCACTACTTAGCCATTGTCATTCTCTATCTTGGTGGAACCTACGACGTAACTGCTGTTGAGTTGTGGCAGGAAGATTGCCAAGAGTGGAGGCGAATGCGCAGGGCATTTGGGACGGTGTTTGATGCTGAGAACCCGCCACGGGGCGACATAAAGTTGAGGTTTCAATTGGGTGGTGATGCACAGCAGTATTGGGTGCAATCCAAGAATGTTATCTCTGGTAATTGGGAAGCTGGAGTTGTTTATGACTCAGAAATTCAGCTTGGTTAA
Predicted protein sequences of Glyma11g04080
>Glyma11g04080.1   sequence type=predicted peptide   gene model=Glyma11g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELNFKYQLSIICVTLLLPALRTSQDSFTCSRATYYGSTDCYGNPRGACGFGEYGKTVNDGSVAGVSWLWKNGSGCGACYQVRCKIPQFCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGSNADASAELFKYGVVDVEYRRVPCRYGGYNLLVKVHEQSRNPHYLAIVILYLGGTYDVTAVELWQEDCQEWRRMRRAFGTVFDAENPPRGDIKLRFQLGGDAQQYWVQSKNVISGNWEAGVVYDSEIQLG*






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