Glyma11g04040 - SoyBase

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Report for Sequence Feature Glyma11g04040

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2700839
stop:	2703052
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47120	AT	Annotation by Michelle Graham. TAIR10: BAX inhibitor 1 \| chr5:19136071-19137585 FORWARD LENGTH=247	SoyBase	E_val: 9.00E-111	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006983	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER overload response	SoyBase	N/A	ISS
GO:0006984	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER-nucleus signaling pathway	SoyBase	N/A	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0043066	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of apoptotic process	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1629	KOG	Bax-mediated apoptosis inhibitor TEGT/BI-1	JGI		ISS
PTHR23291	Panther	BAX INHIBITOR-RELATED	JGI		ISS
PTHR23291:SF4	Panther	BAX INHIBITOR 1	JGI		ISS
PF01027	PFAM	Uncharacterised protein family UPF0005	JGI		ISS
UniRef100_G7JYK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bax inhibitor n=1 Tax=Medicago truncatula RepID=G7JYK5_MEDTR	SoyBase	E_val: 1.00E-131	ISS
UniRef100_I1LGU5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGU5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g04040 not represented in the dataset	Glyma11g04040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04040

Paralog	Evidence	Comments
Glyma01g41380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g037700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g04040

Limit To All Plant Sequences

>Glyma11g04040.2   sequence type=transcript   gene model=Glyma11g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGGCATGCATAGGAGACTTAAATGAAAAGGAAATAAACTTAAGTGGAACCTTCTGCGAAATTAGCCTTCGTCCCTTGATTGAAGTATTAAATATTCCTATATAAATATAAATTGGGGGTCTTGAAATTCAAAGCCATATCTGTGATTCATCAAATTTGTGTTTCCCCGACCCCGATTGCAAGCAATGGACGCCTTCAATTCCTTCTTCGATTCAAGAAACCGATGGAATTACGATACTCTCAAAAACTTCCGTCAGATTTCTCCGGTCGTGCAGAATCACCTGAAGCAGGTTTATTTTACTCTGTGTTTTGCCGTGGTTGCTGCGGCTGTCGGGGCTTACCTTCATGTCCTCTTGAACATTGGGGGTTTTCTTACTACAGTGGCATGCATGGGAAGCAGCTTTTGGTTACTCTCCACACCTCCTTTTGAAGAGAGGAAGAGGGTGACTTTGTTGATGGCCGCATCACTGTTTCAGGGTTCCTCTATTGGACCCTTGATTGATTTGGCTATTCATATCGATCCAAGCCTTATCTTTAGTGCATTTGTGGGAACAGCTTTGGCCTTTGCATGCTTCTCAGGAGCAGCTTTGGTTGCAAGGCGTAGGGAGTACCTGTACCTTGGTGGCTTGGTTTCTTCTGGATTGTCCATCCTTCTCTGGTTGCACTTTGCTTCTTCCATCTTTGGAGGCTCAACAGCTCTCTTTAAGTTTGAGTTGTACTTTGGGCTATTGGTGTTTGTAGGTTACATTGTAGTAGACACCCAAGAAATAGTTGAGAGGGCACACTTGGGCGATCTGGACTATGTAAAGCATGCCTTGACCTTGTTTACCGATTTGGTCGCAGTTTTTGTCCGGATTCTTGTTATTATGTTGAAGAATTCGACTGAGAGGAATGAGAAGAAAAAGAAGAGAAGAGATTGATTTTCTTACCAATCTGCTCGATTAACACTTCACCTCGCTTGGTCTGTAATACATAAAAACAGCCGTCTATACAGTGTTTTCCACTTTTTAAGCTTGCTCCTCCTACTGTGCAGTTAAGTCGTTTGTTTACCAATAGTACATGTTGACATGTTTTGAGCTCTCTAATAAGAGAAATGTTTACATTACATTTGTTTTAAAGATGAAAAGGGGAGTGGGGAAGAAGTCGATGGTGAAGGTCCCTAATAAATTCTTACTCCCAAGACTCAGAATTTTTCTTGGGGAGGAAGTGGAATTCAGGGAAACACTTTTTTTTCACACATTATTGAGTATATTTTATACTAGACTCGCCAAATCACGAATTTCATTATCTATTTAGCTTCTTTTTTTTCCCCCTGTAGTCACTTGTTTTTCGTTTTATTTTTTAA

Coding sequences of Glyma11g04040

Limit To All Plant Sequences

>Glyma11g04040.1   sequence type=CDS   gene model=Glyma11g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCCTTCAATTCCTTCTTCGATTCAAGAAACCGATGGAATTACGATACTCTCAAAAACTTCCGTCAGATTTCTCCGGTCGTGCAGAATCACCTGAAGCAGGTTTATTTTACTCTGTGTTTTGCCGTGGTTGCTGCGGCTGTCGGGGCTTACCTTCATGTCCTCTTGAACATTGGGGGTTTTCTTACTACAGTGGCATGCATGGGAAGCAGCTTTTGGTTACTCTCCACACCTCCTTTTGAAGAGAGGAAGAGGGTGACTTTGTTGATGGCCGCATCACTGTTTCAGGGTTCCTCTATTGGACCCTTGATTGATTTGGCTATTCATATCGATCCAAGCCTTATCTTTAGTGCATTTGTGGGAACAGCTTTGGCCTTTGCATGCTTCTCAGGAGCAGCTTTGGTTGCAAGGCGTAGGGAGTACCTGTACCTTGGTGGCTTGGTTTCTTCTGGATTGTCCATCCTTCTCTGGTTGCACTTTGCTTCTTCCATCTTTGGAGGCTCAACAGCTCTCTTTAAGTTTGAGTTGTACTTTGGGCTATTGGTGTTTGTAGGTTACATTGTAGTAGACACCCAAGAAATAGTTGAGAGGGCACACTTGGGCGATCTGGACTATGTAAAGCATGCCTTGACCTTGTTTACCGATTTGGTCGCAGTTTTTGTCCGGATTCTTGTTATTATGGTGAGTTTGATCGTTAAGCAACAACCTTTTTATATATTCTCTTCTACCTTGCAAATTTGTATTGACGGAATTTTTCCTATTATTTTTCAGTTGAAGAATTCGACTGAGAGGAATGAGAAGAAAAAGAAGAGAAGAGATTGA

>Glyma11g04040.2   sequence type=CDS   gene model=Glyma11g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCCTTCAATTCCTTCTTCGATTCAAGAAACCGATGGAATTACGATACTCTCAAAAACTTCCGTCAGATTTCTCCGGTCGTGCAGAATCACCTGAAGCAGGTTTATTTTACTCTGTGTTTTGCCGTGGTTGCTGCGGCTGTCGGGGCTTACCTTCATGTCCTCTTGAACATTGGGGGTTTTCTTACTACAGTGGCATGCATGGGAAGCAGCTTTTGGTTACTCTCCACACCTCCTTTTGAAGAGAGGAAGAGGGTGACTTTGTTGATGGCCGCATCACTGTTTCAGGGTTCCTCTATTGGACCCTTGATTGATTTGGCTATTCATATCGATCCAAGCCTTATCTTTAGTGCATTTGTGGGAACAGCTTTGGCCTTTGCATGCTTCTCAGGAGCAGCTTTGGTTGCAAGGCGTAGGGAGTACCTGTACCTTGGTGGCTTGGTTTCTTCTGGATTGTCCATCCTTCTCTGGTTGCACTTTGCTTCTTCCATCTTTGGAGGCTCAACAGCTCTCTTTAAGTTTGAGTTGTACTTTGGGCTATTGGTGTTTGTAGGTTACATTGTAGTAGACACCCAAGAAATAGTTGAGAGGGCACACTTGGGCGATCTGGACTATGTAAAGCATGCCTTGACCTTGTTTACCGATTTGGTCGCAGTTTTTGTCCGGATTCTTGTTATTATGTTGAAGAATTCGACTGAGAGGAATGAGAAGAAAAAGAAGAGAAGAGATTGA

Predicted protein sequences of Glyma11g04040

Limit To All Plant Sequences

>Glyma11g04040.1   sequence type=predicted peptide   gene model=Glyma11g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAFNSFFDSRNRWNYDTLKNFRQISPVVQNHLKQVYFTLCFAVVAAAVGAYLHVLLNIGGFLTTVACMGSSFWLLSTPPFEERKRVTLLMAASLFQGSSIGPLIDLAIHIDPSLIFSAFVGTALAFACFSGAALVARRREYLYLGGLVSSGLSILLWLHFASSIFGGSTALFKFELYFGLLVFVGYIVVDTQEIVERAHLGDLDYVKHALTLFTDLVAVFVRILVIMVSLIVKQQPFYIFSSTLQICIDGIFPIIFQLKNSTERNEKKKKRRD*

>Glyma11g04040.2   sequence type=predicted peptide   gene model=Glyma11g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAFNSFFDSRNRWNYDTLKNFRQISPVVQNHLKQVYFTLCFAVVAAAVGAYLHVLLNIGGFLTTVACMGSSFWLLSTPPFEERKRVTLLMAASLFQGSSIGPLIDLAIHIDPSLIFSAFVGTALAFACFSGAALVARRREYLYLGGLVSSGLSILLWLHFASSIFGGSTALFKFELYFGLLVFVGYIVVDTQEIVERAHLGDLDYVKHALTLFTDLVAVFVRILVIMLKNSTERNEKKKKRRD*

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