Report for Sequence Feature Glyma11g04000
Feature Type: gene_model
Chromosome: Gm11
Start: 2677166
stop: 2678881
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g04000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G02890 AT
Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein | chr5:670207-671454 REVERSE LENGTH=353
SoyBase E_val: 2.00E-52 ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0016740 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity
SoyBase N/A ISS
GO:0016747 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups
SoyBase N/A ISS
PF02458 PFAM
Transferase family
JGI ISS
UniRef100_G7JXH4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Omega-hydroxypalmitate O-feruloyl transferase n=1 Tax=Medicago truncatula RepID=G7JXH4_MEDTR
SoyBase E_val: 5.00E-139 ISS
UniRef100_I1LGU1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LGU1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g04000
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma11g04000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g037200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g04000
Coding sequences of Glyma11g04000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g04000.1 sequence type=CDS gene model=Glyma11g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGTGCATGAGAATGGTGGGTCTCCTAGGCAGAGCCAGAGCCTCTCAGAGTTGCAGATTGTGACTATGATGAGCGTGCCACCCCTCAAGATGACCGAACCACGAGCAGTTCGCAAAGTTTTGGTGAGTGAGGACAACACAAGGGCCATTCATGGATGCTACCAAGTAGTTATGTATTATGAGAATTTGAAGGAGAAGGAGCATGGTTGGTGTCTGGCTGGTTTGATTGTGGAGTCACTAGCCAGGGTTCTGTTGGATCACCCTCTACTCGCTGGTCGTCTTCAAAGAAGGGAAGACACCGGTTTCGAAATTGTGGCCAATGATTCTGGCATTCGACTCTTGGAGGCATGCTATCCGACCACCTTGTCACACTTTCTTCACTTGAATGAAGAACAACACCACCTTGTGTTCTGGAAGGAAATTGATACCCAGTATCCTCAGTTTTCTCCCCTGTTTTATGTCCAGGTGACCAACTTCGAATGTGGAGGATACTCGATTGGCATTAGTTGCAGCCTTCTATTGGCAGAGGTTTTTCTGGTGGAAAATTTCCTCGGAAAATGGGCTGAAATACACATGAACATGTCACCCCAACATGAAGAAATTCAGACACCGATATTTCACCACCCTCGTTTGAAAAATCCAGAGTCTCTCCCACCCGATATAATAAGCCGCACTCAAAGGCAAAACGGGGTTCAAAGCATGGTGTTCACAATCACTACCGAAGATGCAAACTTTAGCATGGAACTGTGGAGGGAATTGGCCATGCTTTGCGTTAAGGAAGCAGAACAAAAACTAAGCACAAATTTGGGTTCGGAGTTTTCTTTGGTCGTGAAAGAGTCTTCGGAGGTGGCCAAGGTAGAAAGTTGCTCAATGAATGGATGGAGTGTGGAGGGAATGAGGGTGAAGCATGAGATGAGTGCAAGCAGGTGGGAAGAGTTTGGAGTGTATGAGGTAGCATTTTTTGAGGGAAACAAACCTGTGCAAGTTTCTTGCTGGATTGACTCGGTGAGTGATGGCTATGCTATGGTAGTTCCACTCCCCTACCTCAAGCACAAAAATGCATGTGCTGTCATTGTAGTTTCACCCCCTCTTTCTTCCCTATGA
Predicted protein sequences of Glyma11g04000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g04000.1 sequence type=predicted peptide gene model=Glyma11g04000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEVHENGGSPRQSQSLSELQIVTMMSVPPLKMTEPRAVRKVLVSEDNTRAIHGCYQVVMYYENLKEKEHGWCLAGLIVESLARVLLDHPLLAGRLQRREDTGFEIVANDSGIRLLEACYPTTLSHFLHLNEEQHHLVFWKEIDTQYPQFSPLFYVQVTNFECGGYSIGISCSLLLAEVFLVENFLGKWAEIHMNMSPQHEEIQTPIFHHPRLKNPESLPPDIISRTQRQNGVQSMVFTITTEDANFSMELWRELAMLCVKEAEQKLSTNLGSEFSLVVKESSEVAKVESCSMNGWSVEGMRVKHEMSASRWEEFGVYEVAFFEGNKPVQVSCWIDSVSDGYAMVVPLPYLKHKNACAVIVVSPPLSSL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
