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Report for Sequence Feature Glyma11g03840

Feature Type:gene_model
Chromosome:Gm11
Start:2566048
stop:2572600
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g03840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39810AT Annotation by Michelle Graham. TAIR10: ubiquitin-protein ligases | chr2:16612941-16617802 FORWARD LENGTH=927 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016579GO-bp Annotation by Michelle Graham. GO Biological Process: protein deubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
PTHR10044Panther INHIBITOR OF APOPTOSIS JGI ISS
PTHR10044:SF81Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_G7JXE3UniRef Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase HOS1 n=1 Tax=Medicago truncatula RepID=G7JXE3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233C287UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C287 related cluster n=1 Tax=unknown RepID=UPI000233C287 SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g03840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g03840
ParalogEvidenceComments
Glyma01g41590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g03840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g035800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g03840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g03840
>Glyma11g03840.1   sequence type=CDS   gene model=Glyma11g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAAAAGAAAAACAAAAAAGCGTTTCAAAAACCCTCCAATTCCAATCTGTATGGAGTTTTTCCCTCTACGAGACACAGAGTTGTTCCGAGTACAAATAAATCTGCACCGTTTAATAATCTCGCACCTCATTTCTCAGTGCTTGATCAAATCTGTCTCAGTTCTCCGTTTGGTTATTATTTCTCAGTAATGGATAGGAGGCTCAACGGACCCACCGTTTCGTCCAGCTCCAACGGCGGCCCCGCCGTCGGACGATCTTCTCCTACGCTTCAACCAAACTACAGTAGCCGATTAGTTCAGGAAGCATTGGAACACTTGGCATCCATTGATCTGATTGAGTTGTGCAAAGAAGCCAAAGTTGAGCGCTGTCGAGCAACTCGAGACTTGAGAAGCTGTGGTCGCTATGTCCACCATGTCTTGAATTCCTGCAGACATGCCTCTTTATGCGAAGAATGTAGTCAACGGTGTGATATCTGCCCAATTTGTAGAATCCCAATTTCAAAAAGTGGTGCTAAAGTGCATCTCCGACTTTATTATGAGTGCATAGAAGCAGGCCTTATTTCCAAAAGGTGTGATGAGAGATTTCAAGAAAGAGAAGATGGGGAGAAAGACCTAACTGCTGATGTACAGCGCCTTTATTCTCTGTTTGATGTTACACTTGAGAATAACTTGGTTTCTTTAATTTGCCACTACATCACTGATGTATGTATGGATGAAACTGCTGTTTCCAGTGATCCTGTCATAGCATTTTTGTTGGATGAAGTGGTAGTGAAGGATTGGTGCAAGAGGACATTCAAAAACATCATTGCTGAACTGCAGGGAATTTATGATATGGACATTTTAGGCTTGAAAGAGAGATTGAGTTTACTTCTGAAATTTTCATTATACTTGAAGGGCATATCGAATGTGCTAGACATTTTGGAGTCATCTTTTAAGGGTACTCTTTCAGCACAACTGCACGATTTGCAGAATCTCCAAGAGAGCATCATGAAGACAAAACAGCATATGGATGTTATTATTTGGTGTACAAGACATCAATTTTTGGAAGGTGTGAGGTCACGTTTTACTGATGGTTCATCATGGTCATCAGTTGTTCGGATACGAAAATCAGAAGCAATTAGACGAGCATGGCCTGATGCAATAAATCAATCTGTGGAGTCACAAGGACATGATGGGTCTCTATTTATTGAAGATGCATTGAATAATCTTGATCTGGAGGAGGGGTTTAGGAATGAAATTGTAGAGGGATTAGAAATTGCATCCTTGCAGAAGGATAGTGCATCATTTTTGGGGTCAAATACTGATCAGATGCTGGGTTACTATCCCTTCAAAAATCTTCGTTCTGCTGTTGACTTGCTCTTTTTACATGGAGGCTCTGATATGGTGGTTGCAAAACAGGCCATTTTTCTGTATTATTTATATGATCGCCACTGGACAATTCCTGAAGAGGAATGGAGATACATACTGGAGGACTTTGCAGCTACATTTAGTGTTAACAGGCACTCATTACTTGAGTCTTTGACTTTTTACCTTCTGGATGATCACACAGAGGAGGCTTTACAGGAAGCTTGCCGCCTTCTTCCTGAAATAACTGGCTCAACATCACATCCTAAAATTGCTGAAGTACTATTAGAAAGGGGTATCCCTGATACAGCTCTCATGGTCTTGAGGTGGGCTGGGCGTGATGGTGGACCTCACTTGACTTCACTCAGAGATGGTGTCACTGCAGTGCGGGTGAGGGTTGAGTGTGGGCTTCTGACTGAAGCATTTATGCATCAGAGAGTGCTCTGCACCAGAGTGAAGGAAAAGAATTTCAATAAAACAGCATCTGGGAATACTTCTGAGAAGCAAAAAGGCCAATTTAGTAATTGGGTGGAGTGGGTGGAGGTCCTGGTGACTGAGATTTGTTGCCTCTGTATTAGGAGGAACTTGGTGGATCGAATGCTAGAGTTGCCTTGGAATTCCGAGGAAGAGAAGTATATACATAAATGCCTTTTGGATTATGCTATTGAAGACCCTCTAAGGACATCAGGAAATCTACTTGTTGTGTATTATTTTCAGCGCCACAGATACTCTGAAGCATATCAAGTTCATATTAAACTTGAAAAGGTGGAGCAAGATTGCATTTCAAAAGGTTCCATAAGTCAAGAAAATCTGCCCATATTAGAAAAGGCTATTCACATTAGAGGCAATTTGATTAATAGATGCTTGGAATTGTTGCCAGAAGTTGAGCAGCAACAACTGAGGAGCGGAAACTTGACTGAAGGTGTTGTTACTTGTTGTGCAGAAGTTGAAATTCCTGACAAATTTGATGTTCCCCAGATTCAGGATTTCTTGTCGACCAGTTTGTTGATTCCTTCATCTGCAAATTCTTCCCTGACATTGCATAAAGATCATCCGACTGGCTTGTTGAGTTCGTCGACTTTAGGAAGATCAGCCAAAATAGGCATGTCTTTCCCTACTACTGGCACTGAGCTTGGTAATTTTGGTTCCTTTTCATATCATCATGATGGGTTATTTACAAATAACGAGAGGGTTCCAAGTCATCTAAGTAAAATTGGCAAAAATCTAAGAAATGATAACACTCCAACTCCAAGGAATCATAGGATCCGTTTCATGAATGGTTCACCCCTGAAGGGATTTAATAGGACATCACCAAGCAATTCCCAGGAAAATAGGCCAGACAAAATCTTGCCTGAAGTTGAACAAAATCTACATTTTGGCCATAATCAAACTACCAGTCCTATGTACTCCTGGAAGGCTACAGTCAACCCTGTTACTAGATCCACACTTAGCTATCCTAAAGAATTTGCAAATGATCTCTCAAATATATCTAGTAGGAATGTCCAATCACATAAAGATGATAGAAGTTGGAACATGGGGTCCACTAATGATCCAATGGATGTTTCTCAGAGCCTTGTTGAGAAGAAATTAAATACCGAAGTAAACATCAATGGTGGACCTAGATGGAGATCTGATGATGCAAGTGATGAGGAAGATGATCTGGATCTGGGAAGAGCTATGGATATAGCTTATTATGCAAGTCCTCCAATTCGGACGACAAGACGAAGCAGAGTTTCCAGGAGATGA
Predicted protein sequences of Glyma11g03840
>Glyma11g03840.1   sequence type=predicted peptide   gene model=Glyma11g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKKKNKKAFQKPSNSNLYGVFPSTRHRVVPSTNKSAPFNNLAPHFSVLDQICLSSPFGYYFSVMDRRLNGPTVSSSSNGGPAVGRSSPTLQPNYSSRLVQEALEHLASIDLIELCKEAKVERCRATRDLRSCGRYVHHVLNSCRHASLCEECSQRCDICPICRIPISKSGAKVHLRLYYECIEAGLISKRCDERFQEREDGEKDLTADVQRLYSLFDVTLENNLVSLICHYITDVCMDETAVSSDPVIAFLLDEVVVKDWCKRTFKNIIAELQGIYDMDILGLKERLSLLLKFSLYLKGISNVLDILESSFKGTLSAQLHDLQNLQESIMKTKQHMDVIIWCTRHQFLEGVRSRFTDGSSWSSVVRIRKSEAIRRAWPDAINQSVESQGHDGSLFIEDALNNLDLEEGFRNEIVEGLEIASLQKDSASFLGSNTDQMLGYYPFKNLRSAVDLLFLHGGSDMVVAKQAIFLYYLYDRHWTIPEEEWRYILEDFAATFSVNRHSLLESLTFYLLDDHTEEALQEACRLLPEITGSTSHPKIAEVLLERGIPDTALMVLRWAGRDGGPHLTSLRDGVTAVRVRVECGLLTEAFMHQRVLCTRVKEKNFNKTASGNTSEKQKGQFSNWVEWVEVLVTEICCLCIRRNLVDRMLELPWNSEEEKYIHKCLLDYAIEDPLRTSGNLLVVYYFQRHRYSEAYQVHIKLEKVEQDCISKGSISQENLPILEKAIHIRGNLINRCLELLPEVEQQQLRSGNLTEGVVTCCAEVEIPDKFDVPQIQDFLSTSLLIPSSANSSLTLHKDHPTGLLSSSTLGRSAKIGMSFPTTGTELGNFGSFSYHHDGLFTNNERVPSHLSKIGKNLRNDNTPTPRNHRIRFMNGSPLKGFNRTSPSNSQENRPDKILPEVEQNLHFGHNQTTSPMYSWKATVNPVTRSTLSYPKEFANDLSNISSRNVQSHKDDRSWNMGSTNDPMDVSQSLVEKKLNTEVNINGGPRWRSDDASDEEDDLDLGRAMDIAYYASPPIRTTRRSRVSRR*






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