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Report for Sequence Feature Glyma11g03790

Feature Type:gene_model
Chromosome:Gm11
Start:2535489
stop:2536082
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g03790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11590AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236 SoyBaseE_val: 6.00E-49ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_G7JXD9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor TINY n=1 Tax=Medicago truncatula RepID=G7JXD9_MEDTR SoyBaseE_val: 7.00E-56ISS
UniRef100_I1LGS4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LGS4_SOYBN SoyBaseE_val: 1.00E-129ISS

Expression Patterns of Glyma11g03790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g03790 not represented in the dataset
Glyma11g03790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g03790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g035100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g03790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g03790
>Glyma11g03790.1   sequence type=CDS   gene model=Glyma11g03790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGAAGATAACCAAGTCCATAACTTGACAGAAGAGAAGAAAAAAAGTGAAAACGAAGAAGTGAGTGTTGAGAGTAACGATAAGAAGAAGAAGAAGAGAAGCAGTGATGGGAAGCACCCAACGTATCGCGGTGTGCGCATGCGTAAGTGGGGGAAATGGGTATCAGAAATAAGAGAGCCCAAAAAAAAGTCCAGAATCTGGCTCGGCTCTTTTTCCACGCCAGAAATGGCGGCTCGAGCCCATGATGTCGCGGCTCTCACTATCAAAGGCACTTCTGCGTTCCTTAATTTCCCCGAATTAGCCTCACACCTTCCGCGCCCACTCACCACTTCCCCTAAGGACATCCAAGCCGCCGCCGCCAAAGCTGCTGCACTCAACTTTGAGGCCCAAGTCGAAGCCCAGGCCCAGGCCCAGCTGAGCATACCAAGTTCCTCCTCTGAGGTTGAGTTCCCTGATCTTTTACTGGACTCAAGTCACAGTGCAGGTGAGTTTGATTACTCGGCGCCGTGGCTAGTAGCCGAAGCTGAACATCTAGACTTGGCTTTTCGGCTCGATGACCCTCCTTTCCCTGCTTGGGGGTCTTACTAA
Predicted protein sequences of Glyma11g03790
>Glyma11g03790.1   sequence type=predicted peptide   gene model=Glyma11g03790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEDNQVHNLTEEKKKSENEEVSVESNDKKKKKRSSDGKHPTYRGVRMRKWGKWVSEIREPKKKSRIWLGSFSTPEMAARAHDVAALTIKGTSAFLNFPELASHLPRPLTTSPKDIQAAAAKAAALNFEAQVEAQAQAQLSIPSSSSEVEFPDLLLDSSHSAGEFDYSAPWLVAEAEHLDLAFRLDDPPFPAWGSY*






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