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Report for Sequence Feature Glyma11g03690

Feature Type:gene_model
Chromosome:Gm11
Start:2475875
stop:2478825
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g03690
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47450AT Annotation by Michelle Graham. TAIR10: tonoplast intrinsic protein 2;3 | chr5:19248509-19249466 REVERSE LENGTH=250 SoyBaseE_val: 8.00E-132ISS
GO:0000041GO-bp Annotation by Michelle Graham. GO Biological Process: transition metal ion transport SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0009705GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0042807GO-cc Annotation by Michelle Graham. GO Cellular Compartment: central vacuole SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015200GO-mf Annotation by Michelle Graham. GO Molecular Function: methylammonium transmembrane transporter activity SoyBaseN/AISS
GO:0015250GO-mf Annotation by Michelle Graham. GO Molecular Function: water channel activity SoyBaseN/AISS
KOG0223 KOG Aquaporin (major intrinsic protein family) JGI ISS
PTHR19139Panther AQUAPORIN TRANSPORTER JGI ISS
PTHR19139:SF30Panther AQUAPORIN-7 JGI ISS
PF00230PFAM Major intrinsic protein JGI ISS
UniRef100_G2XKY2UniRef Annotation by Michelle Graham. Best UniRef hit: Tonoplast intrinsic protein n=1 Tax=Glycine soja RepID=G2XKY2_GLYSO SoyBaseE_val: 1.00E-169ISS
UniRef100_G2XKY2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tonoplast intrinsic protein n=1 Tax=Glycine soja RepID=G2XKY2_GLYSO SoyBaseE_val: 1.00E-169ISS

Expression Patterns of Glyma11g03690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g03690 not represented in the dataset
Glyma11g03690 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g03690
ParalogEvidenceComments
Glyma01g41670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g03690 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g034000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g03690
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g03690
>Glyma11g03690.2   sequence type=transcript   gene model=Glyma11g03690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATAATGGAGTGGTTGGTTGTGTTGTTGTTTTATATAGACGAGCTTACAAAAGATGCAGCCTTGGATCCAACGGGGCTGGTGGCAGTAGCTGTGGCCCATGCATTTGCACTGTTTGTAGGTGTCTCCGTCGCAGCCAACATCTCGGGTGGCCATTTGAACCCAGCTGTTACTTTTGGATTGGCCATTGGAGGCAACATCACCCTCATTACTGGTTTCTTATACTGGATTGCCCAGTTGTTGGGTTCCATTGTGGCATGCCTCCTCCTCAATTTCATCACCGCCAAGAGCATTCCAAGCCACGCACCGGCAACTGGTGTGAACGATTTTCAAGCTGTAGTGTTTGAGATTGTAATCACATTTGGGTTGGTTTACACTGTGTATGCAACTGCAGCAGACCCAAAGAAGGGGTCATTGGGTATCATTGCACCCATTGCTATTGGGTTCGTTGTGGGTGCCAACATCTTAGCAGCAGGCCCATTCAGTGGCGGTTCAATGAACCCAGCTCGCTCATTCGGCCCAGCTGTGGTCAGTGGAGACTTCGCTGCTAACTGGATCTATTGGGTTGGCCCATTGATTGGAGGAGGTTTGGCTGGCTTGATTTATGGAGACGTCTTCATTGGTTCATATGCGGCTGTCCCAGCCTCTGAAACCTACCCTTGAGCTTCAACTTGAAAAATATGACTTCTTGTTCTATTCACTTGTGTGTCCTGTCCCTTCAAGTTTCATCTTTGTTCCCCGTTTGATGTCTCGAGCTTCATGGCTTTTTGCATTTTTAACTGTACCTTTATCTATTATTCACCGCTTGTAATAATTATGTAAATTATAATTCGAACTTGATGCATGGATTGTTGGAAGGTCCCCTTGTTTTTCGGTTTTCGTCCTACCAATAATGACATCGAGCTAGTGGTTTTTACGGATCAGTTATGCAGTTCATTTTTTAACTGTAATGAATCTCAGCCACTATTTAACAGAATAATATAATTAAAGAATGTATGTTAAAAGATGAAACTGTA
Coding sequences of Glyma11g03690
>Glyma11g03690.1   sequence type=CDS   gene model=Glyma11g03690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGATAACTCTTGGTACTTTCGATGACTCTTTTGGTGTTGCCTCTCTTAAGGCTTATTTGGCAGAGTTCCATGCAACTCTGATTTTCGTGTTCGCTGGTGTTGGTTCAGCCATCGCTTACAACGAGCTTACAAAAGATGCAGCCTTGGATCCAACGGGGCTGGTGGCAGTAGCTGTGGCCCATGCATTTGCACTGTTTGTAGGTGTCTCCGTCGCAGCCAACATCTCGGGTGGCCATTTGAACCCAGCTGTTACTTTTGGATTGGCCATTGGAGGCAACATCACCCTCATTACTGGTTTCTTATACTGGATTGCCCAGTTGTTGGGTTCCATTGTGGCATGCCTCCTCCTCAATTTCATCACCGCCAAGAGCATTCCAAGCCACGCACCGGCAACTGGTGTGAACGATTTTCAAGCTGTAGTGTTTGAGATTGTAATCACATTTGGGTTGGTTTACACTGTGTATGCAACTGCAGCAGACCCAAAGAAGGGGTCATTGGGTATCATTGCACCCATTGCTATTGGGTTCGTTGTGGGTGCCAACATCTTAGCAGCAGGCCCATTCAGTGGCGGTTCAATGAACCCAGCTCGCTCATTCGGCCCAGCTGTGGTCAGTGGAGACTTCGCTGCTAACTGGATCTATTGGGTTGGCCCATTGATTGGAGGAGGTTTGGCTGGCTTGATTTATGGAGACGTCTTCATTGGTTCATATGCGGCTGTCCCAGCCTCTGAAACCTACCCTTGA

>Glyma11g03690.2   sequence type=CDS   gene model=Glyma11g03690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGTTGGTTGTGTTGTTGTTTTATATAGACGAGCTTACAAAAGATGCAGCCTTGGATCCAACGGGGCTGGTGGCAGTAGCTGTGGCCCATGCATTTGCACTGTTTGTAGGTGTCTCCGTCGCAGCCAACATCTCGGGTGGCCATTTGAACCCAGCTGTTACTTTTGGATTGGCCATTGGAGGCAACATCACCCTCATTACTGGTTTCTTATACTGGATTGCCCAGTTGTTGGGTTCCATTGTGGCATGCCTCCTCCTCAATTTCATCACCGCCAAGAGCATTCCAAGCCACGCACCGGCAACTGGTGTGAACGATTTTCAAGCTGTAGTGTTTGAGATTGTAATCACATTTGGGTTGGTTTACACTGTGTATGCAACTGCAGCAGACCCAAAGAAGGGGTCATTGGGTATCATTGCACCCATTGCTATTGGGTTCGTTGTGGGTGCCAACATCTTAGCAGCAGGCCCATTCAGTGGCGGTTCAATGAACCCAGCTCGCTCATTCGGCCCAGCTGTGGTCAGTGGAGACTTCGCTGCTAACTGGATCTATTGGGTTGGCCCATTGATTGGAGGAGGTTTGGCTGGCTTGATTTATGGAGACGTCTTCATTGGTTCATATGCGGCTGTCCCAGCCTCTGAAACCTACCCTTGA
Predicted protein sequences of Glyma11g03690
>Glyma11g03690.1   sequence type=predicted peptide   gene model=Glyma11g03690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKITLGTFDDSFGVASLKAYLAEFHATLIFVFAGVGSAIAYNELTKDAALDPTGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAIGGNITLITGFLYWIAQLLGSIVACLLLNFITAKSIPSHAPATGVNDFQAVVFEIVITFGLVYTVYATAADPKKGSLGIIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGDFAANWIYWVGPLIGGGLAGLIYGDVFIGSYAAVPASETYP*

>Glyma11g03690.2   sequence type=predicted peptide   gene model=Glyma11g03690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWLVVLLFYIDELTKDAALDPTGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAIGGNITLITGFLYWIAQLLGSIVACLLLNFITAKSIPSHAPATGVNDFQAVVFEIVITFGLVYTVYATAADPKKGSLGIIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGDFAANWIYWVGPLIGGGLAGLIYGDVFIGSYAAVPASETYP*






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