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Report for Sequence Feature Glyma11g03670

Feature Type:gene_model
Chromosome:Gm11
Start:2461305
stop:2466236
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51160AT Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein | chr1:18950057-18951560 FORWARD LENGTH=169 SoyBaseE_val: 3.00E-110ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005801GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cis-Golgi network SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3368 KOG Transport protein particle (TRAPP) complex subunit JGI ISS
PTHR23249Panther SYNBINDIN JGI ISS
PTHR23249:SF9Panther TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 JGI ISS
PF04099PFAM Sybindin-like family JGI ISS
UniRef100_C6TN24UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TN24_SOYBN SoyBaseE_val: 5.00E-123ISS
UniRef100_G7LGH7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Trafficking protein particle complex subunit n=1 Tax=Medicago truncatula RepID=G7LGH7_MEDTR SoyBaseE_val: 3.00E-98ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g03670 not represented in the dataset

Glyma11g03670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g41690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g033800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g03670.1   sequence type=CDS   gene model=Glyma11g03670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTCTTTGGGGGGTCTGAGATTAGTCCTTCACCTCCTGCTCCGACAGCTTCAGGAAACAATGGCCATATGATGTATGTGTTCAATAGGAATGGTGTGTGCCTGCTCTATAGGGAGTGGAATCGTCCCTTGCGGACATTGGATGCCCAGCAAGACCAAAAGTTAATGTTTGGTCTACTTTTCTCTCTGAAGTCATTAACTGCCAAGATGGACCCCACTAGTGCTGTTGAGAAAGGAAACCTTGGTATGCCACAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTCCGCACTAATACGTACAAACTTAGTTTCATGGAAAGTCCTTCTGGAATAAAGATCATCTTGGTGACTCATCCTAGAACTGGTGATCTACGGGAATCCTTAAAGTATATCTACAATTTGTATGTTGAATATGTTGTCAAGAATCCGCTCTATACACCTGGATCTCCTATTAGGTGTGAGCTGTTCAATACAACGTTGGACCAGTATGTGAGAGGCATTTCATAG

>Glyma11g03670.1   sequence type=predicted peptide   gene model=Glyma11g03670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQFFGGSEISPSPPAPTASGNNGHMMYVFNRNGVCLLYREWNRPLRTLDAQQDQKLMFGLLFSLKSLTAKMDPTSAVEKGNLGMPQLPGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYTPGSPIRCELFNTTLDQYVRGIS*







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