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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma11g03641

Feature Type:gene_model
Chromosome:Gm11
Start:2436276
stop:2441908
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16650AT Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein | chr4:9372727-9375910 FORWARD LENGTH=549 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PF10250PFAM GDP-fucose protein O-fucosyltransferase JGI ISS
UniRef100_G7JIV4UniRef Annotation by Michelle Graham. Most informative UniRef hit: DUF246 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JIV4_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233CB61UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CB61 related cluster n=1 Tax=unknown RepID=UPI000233CB61 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g03641 not represented in the dataset

Glyma11g03641 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g41740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g033500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g03641.2   sequence type=transcript   gene model=Glyma11g03641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACATTCCTAGGTAGTCTGCGGTTGATTCTGCTTTTCAGTTTTTCAGATTCAGGGCTTGTTTCAACCGGGACAAATATCGTTTCCAGCAACACTGATCCATCCTCCTGCACGAATCACGTTATAATTATTCCCTTCTTCTCCTTTTGCTTCCACACCGTTCGAAAATTAAGTAATAAAACTAATTCGCCACAGTTTGGTTTGTTTCGTGAATGGGATCAGATCTGTAGGCCCACGTTTTTCATTTTCATTTTTAAAAGAGAGAGAGAGAGAGCAGTGTGATTTTCTTTCTTTCCTTTTGAGGAAACGACAATTCTGTGTTGCCTCCATATCCGTGCTTACTCACTAAACTGTTCTTCAACCATAAAGACCCTACTAATTTAGGGTTCCTATACTTGTTTTTGTGTTGGGGAGAGGATGTGAGGGTTTGTTTCTTGTAAGGTAAAAACAATGGGTGTGGGTGTGGGTTTGGAGAAGTTGAGCTTATTATCGACGACGAACCTGGCCGTGTTAGCTCAAGCGAACAACAAATGCAGCAGCAGCAGGAAGCACGTGTGTTGGAGATCATCCACCACGACCACGACGCCGTTTCAGCAGCAGCGGAAGCCGATCTCTTGGTCTGTGATGTGCGGCTTCATGCTATTTGGGCTGGGCCTCATTTCGCTCTTGACTGGCCACATGGCCTCTGATCTCGAATGGTACTCTCACCGTCGCTCTCTCTACTCTACAATGGATGGGAGCTATCGTGCGCCAATCGATGTTTGGAAATCCCAGTATTCTAAATATTACTACGGATGCGCTGAAAGGGGACGCGGTTATGCTCCTGCTGTGCCTGAGAGGATGTCAAATGGCTACTTGCTTATTGGTACTAGTGGAGGATTGAACCAACAAAGAACTGGGATAACAGATGCTGTTGTTGTTGCCCGAATTCTTAATGCCACACTAGTAGTACCGGAGTTGGATCATCATTCTTATTGGAAGGATGACAGTGACTTCATCCATATTTTCGATGTTGATTGGTTCATTTCTTATCTCGCAAAAGATGTTACTATTGTTAAAAGAGTTCCTGATAAGTTCATGCGGTCAATGGAGAAACCACCATATACAATGCGTGTCCCAAGGAAATCAGAGCCTGATTATTATCTTGATCAAGTTTTGCCTATACTTTTGAGACGACAGGTTGTTCAATTGACAAAATTTGACTACAGACTTGCAAATAACCTTGATGATGAGCTACAAAAACTACGTTGCCGCGTTAATTTTCATGCTTTGAGATTTACAAAACCTATACAAGAACTTGGTCAAAGAATTGTTATGAGAATGCAAAAGATGGCACCGCGTTTCATAGCAGTCCATTTGAGGTTTGAACCAGATATGCTAGCATTTTCAGGTTGTTATTTTGGTGGGGGAGAAAAAGAGAGACGTGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTACCTGATTTGAGCCCAGATGGAGAACGGAAGCGAGGGAAATGTCCTCTTAGTCCTCATGAAGTGGGTTTGATGCTGCGGGCACTTGGCTTTTCAAATGACACATACCTCTATGTTGCGTCAGGAGAAGTATATGGAGGGGAAGAAACTATGCAGCCTCTCAGAGATCTTTTTCCCAACATCTATACAAAGGAGATGCTAGCTGAGGAAGAGCTGAAACCTTTCCTTCCATTCTCTTCCCGCCTTGCTGCTATTGACTACATTGTTTGTGATGAAAGTGATGTATTTGTTACTAACAACAATGGTAACATGGCAAAGATTCTCGCAGGTCGAAGGAGATATATGGGTCACAAAAGAACAATCAGACCAAATGCAAAGAAGCTTAGCACGCTATTGGCGGGAAGGCATCAAATGGACTGGGATACCTTTGCCAAAAAGGTTAAGTCATGCCAGAGAGGATTCATGGGAGAGCCAGATGAGATGAGACCTGGACGAGGTGAATTTCATGAATTTCCAAGCTCTTGCGTGTGCAGGAGACCATATGTGGATGAAGAACTCAGCAAAGAGGTATACCGTTCCCCTAAACTCGTTGCAATTAACCTTACTGCAAAAGCTTATTCCTCGTCGAATGGAATTAGAAGAGGCAGGACATGATGCAGTAGTTACCTTGAACCATGGAGGTTATATCTAGCGGGGCGAAAGAAAATCAGTGTTGTCTCTCGCTCTGTTAATGCCAACTGAACGTCAATTGAAAATTGAATGCTATGGCAATGCGTCCATTTTCACACAATTGATCTCTGTAAATCATCAGGGGAGGGGTTCTTAGGTGGGTGGCTCAGTTTAGGACCTAAGGACGTCAATGCGTTGCAAAGTGTAGATATATATAATATAATATTATAATATATGCTTAGCTTAGATTGCTTTCAATCTTTTTTCGCCACAATGTCATACAAATTTGAGTTAGACATTTTCTCCTATTCTATCAGCTTAATCTATTTTTGTCAACTAATTAATTCAGATAT

>Glyma11g03641.1   sequence type=CDS   gene model=Glyma11g03641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTGGGTGTGGGTTTGGAGAAGTTGAGCTTATTATCGACGACGAACCTGGCCGTGTTAGCTCAAGCGAACAACAAATGCAGCAGCAGCAGGAAGCACGTGTGTTGGAGATCATCCACCACGACCACGACGCCGTTTCAGCAGCAGCGGAAGCCGATCTCTTGGTCTGTGATGTGCGGCTTCATGCTATTTGGGCTGGGCCTCATTTCGCTCTTGACTGGCCACATGGCCTCTGATCTCGAATGGTACTCTCACCGTCGCTCTCTCTACTCTACAATGGATGGGAGCTATCGTGCGCCAATCGATGTTTGGAAATCCCAGTATTCTAAATATTACTACGGATGCGCTGAAAGGGGACGCGGTTATGCTCCTGCTGTGCCTGAGAGGATGTCAAATGGCTACTTGCTTATTGGTACTAGTGGAGGATTGAACCAACAAAGAACTGGGATAACAGATGCTGTTGTTGTTGCCCGAATTCTTAATGCCACACTAGTAGTACCGGAGTTGGATCATCATTCTTATTGGAAGGATGACAGTGACTTCATCCATATTTTCGATGTTGATTGGTTCATTTCTTATCTCGCAAAAGATGTTACTATTGTTAAAAGAGTTCCTGATAAGTTCATGCGGTCAATGGAGAAACCACCATATACAATGCGTGTCCCAAGGAAATCAGAGCCTGATTATTATCTTGATCAAGTTTTGCCTATACTTTTGAGACGACAGGTTGTTCAATTGACAAAATTTGACTACAGACTTGCAAATAACCTTGATGATGAGCTACAAAAACTACGTTGCCGCGTTAATTTTCATGCTTTGAGATTTACAAAACCTATACAAGAACTTGGTCAAAGAATTGTTATGAGAATGCAAAAGATGGCACCGCGTTTCATAGCAGTCCATTTGAGGTTTGAACCAGATATGCTAGCATTTTCAGGTTGTTATTTTGGTGGGGGAGAAAAAGAGAGACGTGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTACCTGATTTGAGCCCAGATGGAGAACGGAAGCGAGGGAAATGTCCTCTTAGTCCTCATGAAGTGGGTTTGATGCTGCGGGCACTTGGCTTTTCAAATGACACATACCTCTATGTTGCGTCAGGAGAAGTATATGGAGGGGAAGAAACTATGCAGCCTCTCAGAGATCTTTTTCCCAACATCTATACAAAGGAGATGCTAGCTGAGGAAGAGCTGAAACCTTTCCTTCCATTCTCTTCCCGCCTTGCTGCTATTGACTACATTGTTTGTGATGAAAGTGATGTATTTGTTACTAACAACAATGGTAACATGGCAAAGATTCTCGCAGGTCGAAGGAGATATATGGGTCACAAAAGAACAATCAGACCAAATGCAAAGAAGCTTAGCACGCTATTGGCGGGAAGGCATCAAATGGACTGGGATACCTTTGCCAAAAAGGTTAAGTCATGCCAGAGAGGATTCATGGGAGAGCCAGATGAGATGAGACCTGGACGAGGTGAATTTCATGAATTTCCAAGCTCTTGCGTGTGCAGGAGACCATATGTGGATGAAGAACTCAGCAAAGAGGTATACCGTTCCCCTAAACTCGTTGCAATTAACCTTACTGCAAAAGCTTATTCCTCGTCGAATGGAATTAGAAGAGGCAGGACATGA

>Glyma11g03641.2   sequence type=CDS   gene model=Glyma11g03641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTGGGTGTGGGTTTGGAGAAGTTGAGCTTATTATCGACGACGAACCTGGCCGTGTTAGCTCAAGCGAACAACAAATGCAGCAGCAGCAGGAAGCACGTGTGTTGGAGATCATCCACCACGACCACGACGCCGTTTCAGCAGCAGCGGAAGCCGATCTCTTGGTCTGTGATGTGCGGCTTCATGCTATTTGGGCTGGGCCTCATTTCGCTCTTGACTGGCCACATGGCCTCTGATCTCGAATGGTACTCTCACCGTCGCTCTCTCTACTCTACAATGGATGGGAGCTATCGTGCGCCAATCGATGTTTGGAAATCCCAGTATTCTAAATATTACTACGGATGCGCTGAAAGGGGACGCGGTTATGCTCCTGCTGTGCCTGAGAGGATGTCAAATGGCTACTTGCTTATTGGTACTAGTGGAGGATTGAACCAACAAAGAACTGGGATAACAGATGCTGTTGTTGTTGCCCGAATTCTTAATGCCACACTAGTAGTACCGGAGTTGGATCATCATTCTTATTGGAAGGATGACAGTGACTTCATCCATATTTTCGATGTTGATTGGTTCATTTCTTATCTCGCAAAAGATGTTACTATTGTTAAAAGAGTTCCTGATAAGTTCATGCGGTCAATGGAGAAACCACCATATACAATGCGTGTCCCAAGGAAATCAGAGCCTGATTATTATCTTGATCAAGTTTTGCCTATACTTTTGAGACGACAGGTTGTTCAATTGACAAAATTTGACTACAGACTTGCAAATAACCTTGATGATGAGCTACAAAAACTACGTTGCCGCGTTAATTTTCATGCTTTGAGATTTACAAAACCTATACAAGAACTTGGTCAAAGAATTGTTATGAGAATGCAAAAGATGGCACCGCGTTTCATAGCAGTCCATTTGAGGTTTGAACCAGATATGCTAGCATTTTCAGGTTGTTATTTTGGTGGGGGAGAAAAAGAGAGACGTGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTACCTGATTTGAGCCCAGATGGAGAACGGAAGCGAGGGAAATGTCCTCTTAGTCCTCATGAAGTGGGTTTGATGCTGCGGGCACTTGGCTTTTCAAATGACACATACCTCTATGTTGCGTCAGGAGAAGTATATGGAGGGGAAGAAACTATGCAGCCTCTCAGAGATCTTTTTCCCAACATCTATACAAAGGAGATGCTAGCTGAGGAAGAGCTGAAACCTTTCCTTCCATTCTCTTCCCGCCTTGCTGCTATTGACTACATTGTTTGTGATGAAAGTGATGTATTTGTTACTAACAACAATGGTAACATGGCAAAGATTCTCGCAGGTCGAAGGAGATATATGGGTCACAAAAGAACAATCAGACCAAATGCAAAGAAGCTTAGCACGCTATTGGCGGGAAGGCATCAAATGGACTGGGATACCTTTGCCAAAAAGGTTAAGTCATGCCAGAGAGGATTCATGGGAGAGCCAGATGAGATGAGACCTGGACGAGGTGAATTTCATGAATTTCCAAGCTCTTGCGTGTGCAGGAGACCATATGTGGATGAAGAACTCAGCAAAGAGGTATACCGTTCCCCTAAACTCGTTGCAATTAACCTTACTGCAAAAGCTTATTCCTCGTCGAATGGAATTAGAAGAGGCAGGACATGA

>Glyma11g03641.1   sequence type=predicted peptide   gene model=Glyma11g03641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVGVGLEKLSLLSTTNLAVLAQANNKCSSSRKHVCWRSSTTTTTPFQQQRKPISWSVMCGFMLFGLGLISLLTGHMASDLEWYSHRRSLYSTMDGSYRAPIDVWKSQYSKYYYGCAERGRGYAPAVPERMSNGYLLIGTSGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFIHIFDVDWFISYLAKDVTIVKRVPDKFMRSMEKPPYTMRVPRKSEPDYYLDQVLPILLRRQVVQLTKFDYRLANNLDDELQKLRCRVNFHALRFTKPIQELGQRIVMRMQKMAPRFIAVHLRFEPDMLAFSGCYFGGGEKERRELGEIRKRWTTLPDLSPDGERKRGKCPLSPHEVGLMLRALGFSNDTYLYVASGEVYGGEETMQPLRDLFPNIYTKEMLAEEELKPFLPFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKKLSTLLAGRHQMDWDTFAKKVKSCQRGFMGEPDEMRPGRGEFHEFPSSCVCRRPYVDEELSKEVYRSPKLVAINLTAKAYSSSNGIRRGRT*

>Glyma11g03641.2   sequence type=predicted peptide   gene model=Glyma11g03641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVGVGLEKLSLLSTTNLAVLAQANNKCSSSRKHVCWRSSTTTTTPFQQQRKPISWSVMCGFMLFGLGLISLLTGHMASDLEWYSHRRSLYSTMDGSYRAPIDVWKSQYSKYYYGCAERGRGYAPAVPERMSNGYLLIGTSGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFIHIFDVDWFISYLAKDVTIVKRVPDKFMRSMEKPPYTMRVPRKSEPDYYLDQVLPILLRRQVVQLTKFDYRLANNLDDELQKLRCRVNFHALRFTKPIQELGQRIVMRMQKMAPRFIAVHLRFEPDMLAFSGCYFGGGEKERRELGEIRKRWTTLPDLSPDGERKRGKCPLSPHEVGLMLRALGFSNDTYLYVASGEVYGGEETMQPLRDLFPNIYTKEMLAEEELKPFLPFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKKLSTLLAGRHQMDWDTFAKKVKSCQRGFMGEPDEMRPGRGEFHEFPSSCVCRRPYVDEELSKEVYRSPKLVAINLTAKAYSSSNGIRRGRT*







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