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Report for Sequence Feature Glyma11g03630

Feature Type:gene_model
Chromosome:Gm11
Start:2429236
stop:2431009
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16640AT Annotation by Michelle Graham. TAIR10: Matrixin family protein | chr4:9367396-9368490 REVERSE LENGTH=364 SoyBaseE_val: 2.00E-122ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0031012GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular matrix SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0004222GO-mf Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity SoyBaseN/AISS
GO:0008237GO-mf Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR10201Panther MATRIX METALLOPROTEINASE JGI ISS
PTHR10201:SF15Panther MATRIX METALLOPROTEINASE-RELATED JGI ISS
PF00413PFAM Matrixin JGI ISS
PF01471PFAM Putative peptidoglycan binding domain JGI ISS
UniRef100_G7JW40UniRef Annotation by Michelle Graham. Most informative UniRef hit: Matrix metalloproteinase-28 n=1 Tax=Medicago truncatula RepID=G7JW40_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LGQ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LGQ7_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g03630 not represented in the dataset

Glyma11g03630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g41750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g033400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g03630.1   sequence type=CDS   gene model=Glyma11g03630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCCGTTTTTCCGTTACTTCAACTTGTACTTCCTCTGCATGACCCTCTTCCTTTGGCGCCCTTGCTTTCCCGCCAGGATCGTACCCGAGTCCGTAACCGTGGTAACCACCGAAACTGAAAAAACCGTAACGCACAACGCCACGTGGCACGATTTCTCGAAATTCCTACACGCAGAGCGAGGTAGCCACGTCAGCGGCATGGCGGAACTGAAAAAATACTTCCACCGCTTCGGTTACCTCTCCCTCCCCGAAACGACGCCGAATTTCACAGACACCTTCGATTCTCAATTCGAGTCCGCTCTCGTCCGTTTCCAGAAACGCCTCGGCTTGCCAGTCACCGGAAAACTCGACTCCGACACGATTTCCGCGATTGTGGCGCCGAGGTGCGGCGTCTCCGACGCCGCACCGCACGGATTACACGCCACGCGTCGCTTCGCTTACTTCAACGGGAAGCCGCGGTGGACGCGCGGAACTCCGATGACTCTCACGTATGCTTTTTCTCCGTATAACATGATCGACCGCGTGAGCTTGCCGGAAATCCGAGCGGTGTTCGAGCGTGCGTTCGCGCGGTGGGCGTCGGTGATTCCGGTGAGTTTCCAGGAGACGCCGGAGTACGATAGGGCTGACATCACGATCGGGTTTTACCTCGGGGATCACGGCGACGGAGAACCGTTCGACGGTGTTTTAGGCGTTTTGGCGCACGCGTTCTCCCCTCAGAATGGGAGATTCCATTTGGATGCGGCGGAAACGTGGTCCGTTGATTTCGAGCGCGAAGAGTCGAGGGTTGCCGTTGATTTGGAATCTGTGGCGACGCACGAGATAGGTCACGTGCTTGGGTTGGGTCACTCTTCGGTGAAGGAAGCGGTCATGTACCCGAGCCTCAGCCCCAGGAGAAAGAAGGTTGACTTGAGAATTGATGACGTGGCAGGAGTCCAAGCTCTTTACGGCTCTAACCCAAACTTTACTTTTAGTTCTTTGTTGCAGTCTCAGAATTCATTAAACGCTGCCGTTGGGTTGGAAACCGGTTTCTATAAATGGACCCTCACTTTACCTCTTGCCTTCTTCCTATTATTTTTAAGTGCTTGA

>Glyma11g03630.1   sequence type=predicted peptide   gene model=Glyma11g03630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFPFFRYFNLYFLCMTLFLWRPCFPARIVPESVTVVTTETEKTVTHNATWHDFSKFLHAERGSHVSGMAELKKYFHRFGYLSLPETTPNFTDTFDSQFESALVRFQKRLGLPVTGKLDSDTISAIVAPRCGVSDAAPHGLHATRRFAYFNGKPRWTRGTPMTLTYAFSPYNMIDRVSLPEIRAVFERAFARWASVIPVSFQETPEYDRADITIGFYLGDHGDGEPFDGVLGVLAHAFSPQNGRFHLDAAETWSVDFEREESRVAVDLESVATHEIGHVLGLGHSSVKEAVMYPSLSPRRKKVDLRIDDVAGVQALYGSNPNFTFSSLLQSQNSLNAAVGLETGFYKWTLTLPLAFFLLFLSA*







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