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Report for Sequence Feature Glyma11g03580

Feature Type:gene_model
Chromosome:Gm11
Start:2389115
stop:2394886
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47490AT Annotation by Michelle Graham. TAIR10: RGPR-related | chr5:19264675-19270487 FORWARD LENGTH=1361 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
KOG1913 KOG Regucalcin gene promoter region-related protein (RGPR) JGI ISS
PTHR13402Panther RGPR-RELATED JGI ISS
UniRef100_G7JW34UniRef Annotation by Michelle Graham. Most informative UniRef hit: COPII coat assembly protein sec16 n=1 Tax=Medicago truncatula RepID=G7JW34_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233CB5CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CB5C related cluster n=1 Tax=unknown RepID=UPI000233CB5C SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g03580 not represented in the dataset

Glyma11g03580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g032900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g03580.2   sequence type=CDS   gene model=Glyma11g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGAATCCTCCATTTCACATGGAGGATCAGACGGATGAGGATTTCTTTAATAAACTTGTTGAGGATGATATGGAGCCTCATAAGTCTGGCCATGATGAAGGGGATGATTCCGATGAGGCTAAAGCATTTGCAAATCTGGGAATCAATGATGTCGATGCTGCTGCATTTGATAATTCTGATGCTGCTGTGAGTGGTGTTGAAGTCAAAGGGGGATTGGGTACAGTGGAATCCGATGCAGGATTTGAACAAGAGGGGAATTCGTTGCCCTCCTCTAGTTCAGCTGGGTTTGATAGTAAGGTGGGTCCCGGTGAGGATGGGATTGGGGTGGGATCAGAAGTCAGGTCCGCTTCAGCTGTAGGCACGAGCAATAAAGTCAGTAGTTCTGAGGTTAAGGAGGTGGGTTGGAATTCTTTTCATGCTGATTTGAATGGAGGCGGCGGGTTTGGATCATATTCTGACTTTTTCAGTGAATTGGGAGATCAGTCTGGGGATTTTACGGGGAATGTGTACGATAATTTAAGTAGTGAGGTGAAGCAAGGTAATGAAGTTCAAAATGATGGCTCAAATGCCTTAGGTAATTATGTGCAATATCACGAGGGTCAAGGTTATGATGGATCTTTAGAAAGCCACACAAACAGGCAAGGTGATGGGTTAAATGCTTCAGTTAATCATGTACAGTATCAAGAAGGTGAAACTTATGTTGCATCTTCAGAAGAACACACAAATGGACAGGATCTGAGTAGTAGTCAGTATTGGGAGGATCTTTATCCTGGCTGGAAGTATGACTACAAAACCGGGCAATGGTATCAAATAGATGGCTATAGAGCAACAGCCACTACTCAGCAAAGCTCTGAAGCCAATATAGCTGTGGATTCGAGTGCCGCTTCTGATGGGAAAACAGAGATCTCTTACATGCAGCAAACTGCTCAATCTGTTGCAGGAACTTTAGCTGAAACTGGCACTACTAAAAATGTGTCTAGCTGGAGTCAGGTTTCAGAAGGGAATCATGGGTATCCAGAGCATATGGTTTTTGATCCTCAGTATCCTGGTTGGTATTATGACACAATTGCCCAAGAATGGCGTTCATTGGAAACTTATAATTCAACCATCCAGTCTTCTGGTCATGGACATGAAAATGGGAATGCTTCTGCCAATACATTCTCACCCAATGATCATAGTTTGTATAGTGAATACAGCCAAGCTGATAATTATGGACAACGGGACGTTGATAATCAGGCTGTAGATGGCAGCTGGAGTGGTTTGTATGGCACTAACCATAAGCAGGGTTTTGAGATGTACACAACTGGGTCAGCCACTATACGAGGGGATAATATAACTTCTGGTGGCAACCAACAGATTAATCATTCTTATGGTTCAAGTATTTCTGTGAACGAACATCAACAAAATACTTCTAGTTCTTTTGGATCCGTTGCATTGTACAATAGAGTAAACCATGATCGTGGTTTTGCTAATGGAACTTTTAAACCACAAAGCTTTGGCCCTACTGGGGACACTGTTCAACAGTTTAATTATTCAACCACAAAGTTTAGTGAACAAAAAGTTTTTTCAAATGATTTTACTGAAAATGAAAAACCCCTCAGTTATTCTCCACAATCAATTCAGGGTGGGCATCAGTATTCACATGCCCCTCATGTTGGGAGATCATCAGCTGGACGTCCTTCTCATGCTTTGGTAACTTTTGGATTTGGGGGAAAACTCATCATAATGAAAGATCCTAATCTTTTGAGCTCATCATACGGAAGCCAGGATTCTGTACAAGGTTCTGTTTCTGTGTTGAACTTGATTGAAGTTGTCACGGGAAATATGGATTCTTTGAGCATCAGACATAACACCAGTAACTATTTCCATGCTCTGAGCCAGCAATCATTCCCAGGTCCGTTGGTTGGCGGGAGTGTTGGAAGTAAGGAACTGTACAAATGGTTAGATGAGAGGATTGCACACTGCGAATCACCTGACATGGATTATAAGAAAGGTGAAAGGTTGAGACTCCTTCTTTCCTTGCTTAAAATCGGTTGTCAACATTATGGAAAGCTACGTTCTCCATTTGGTACGGACACCATACTAAAAGAAAGTGATACTCCTGAGTCAGCAGTTGCAAAACTTTTTGCATCTGCCAAGATGAGTGGCACTCAATATGGGATGCCAAGCCACTGCTTGCAAAATTTGCCTTCTGAAGGACAAATGAGGGCAATGGCTCTTGAAGTTCAAAATCTTCTTGTCTCTGGCAAAAAGAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTTGCTTCACAACTTGGCGAACAGTTCTATGTTGATACAGTGAAGCAAATGGCACTTCGCCAGCTGATTGCAGGGTCACCTTTGCGCACATTATGCCTTCTAATTGCTGGGCAACCTGCTGAAGTTTTCTCTACTGATACCTCAATTAGTGAGCATCCTGGTGCTTCTAATATGGCTCAGCAGTCTTCACAGGTTGGATCCAATGGCATGCTTGATGATTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAGATGATGAACTTGTAATTATTCACCTTGGTGATTGCTTGTGGAAGGAAAGAAGTGAGATTACTGCCGCACACATCTGCTATTTAGTTGCTGAAGCAAATTTCGAGTCATACTCAGATAGCGCAAGACTCTGTCTAATTGGAGCAGATCACTGGAAATGTCCTCGAACTTATGCTAGTCCAGAGGCTATCCAGAGGACCGAGTTATATGAATATTCAAAGGTGGTTGGAAACTCTCAGTTTACTTTGCATCCATTTCAGCCGTATAAGCTTATATATGCATTTTTGCTAGCTGAAGTGGGGAAGGTTTCAGACTCACTGAAGTACTGCCAAGCACTACTGAAATCCTTGAAAACTGGCCGTGCTCCAGAAGTAGAGTCATGGAAGCAGTTAGCACTATCTCTTGAGGAGAGGATTAGAATTCACCAACAGGGTGGATATGCTGCAAATTTAGCTCCTGCAAAATTAGTTGGCAAATTGCTCAACTTTTTTGATAGCACTGCACATCGAGTTGTTGGTGGTTTACCACCGCCTGCTCCTTCGTCATCAGCAGGAACTGTTCATGGAAGTGAAAAACAATACCAAAATATGGCACCTAGAGTATCCTCTAGCCAATCAACAATGTCGTTGGCTCCATCTGCTTCGATGGAACCCATAAGTGAGTGGACAGCTGACAATAATAGAATGGGAAAGCCTAATAGGAGTGTTTCTGAGCCAGATTTTGGTAGAACCCCAAGACAGGAAACGACGTCACCTGATGCACAAGAAAAACCCCAGGCATCAGGGGGTACATCTCGCTTTTCCCGATTTGGTTTTGGCTCACAACTTTTGCAAAAGACAGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGGCTAAATTGGGTGACAAAAATAAGTTCTATTATGATGAGAAGCTGAAGAGATGGGTGGAGGAAGGTGCTGAAGTTCCAGCTGAAGAAGCTGCTGCTCTGACACCGCCTCCAACAACTGCTGCTTTCCAGAATGGTTCAACTGAATACAACTTGAGATCTGCATTGAAAACTGAAAGTTCACCTCCTATTGAGGGCTCTAGCATAAGAACTTCTAGCCTTGAACTTAGTCCCGGGATGCCGCTGATACCACCCAGCGCAAATCAATTCTCAGCCCGGGGTCGTTTGGGTGTTCGATCAAGGTAG

>Glyma11g03580.2   sequence type=predicted peptide   gene model=Glyma11g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNPPFHMEDQTDEDFFNKLVEDDMEPHKSGHDEGDDSDEAKAFANLGINDVDAAAFDNSDAAVSGVEVKGGLGTVESDAGFEQEGNSLPSSSSAGFDSKVGPGEDGIGVGSEVRSASAVGTSNKVSSSEVKEVGWNSFHADLNGGGGFGSYSDFFSELGDQSGDFTGNVYDNLSSEVKQGNEVQNDGSNALGNYVQYHEGQGYDGSLESHTNRQGDGLNASVNHVQYQEGETYVASSEEHTNGQDLSSSQYWEDLYPGWKYDYKTGQWYQIDGYRATATTQQSSEANIAVDSSAASDGKTEISYMQQTAQSVAGTLAETGTTKNVSSWSQVSEGNHGYPEHMVFDPQYPGWYYDTIAQEWRSLETYNSTIQSSGHGHENGNASANTFSPNDHSLYSEYSQADNYGQRDVDNQAVDGSWSGLYGTNHKQGFEMYTTGSATIRGDNITSGGNQQINHSYGSSISVNEHQQNTSSSFGSVALYNRVNHDRGFANGTFKPQSFGPTGDTVQQFNYSTTKFSEQKVFSNDFTENEKPLSYSPQSIQGGHQYSHAPHVGRSSAGRPSHALVTFGFGGKLIIMKDPNLLSSSYGSQDSVQGSVSVLNLIEVVTGNMDSLSIRHNTSNYFHALSQQSFPGPLVGGSVGSKELYKWLDERIAHCESPDMDYKKGERLRLLLSLLKIGCQHYGKLRSPFGTDTILKESDTPESAVAKLFASAKMSGTQYGMPSHCLQNLPSEGQMRAMALEVQNLLVSGKKKEALQCAQEGQLWGPALVLASQLGEQFYVDTVKQMALRQLIAGSPLRTLCLLIAGQPAEVFSTDTSISEHPGASNMAQQSSQVGSNGMLDDWEENLAVITANRTKDDELVIIHLGDCLWKERSEITAAHICYLVAEANFESYSDSARLCLIGADHWKCPRTYASPEAIQRTELYEYSKVVGNSQFTLHPFQPYKLIYAFLLAEVGKVSDSLKYCQALLKSLKTGRAPEVESWKQLALSLEERIRIHQQGGYAANLAPAKLVGKLLNFFDSTAHRVVGGLPPPAPSSSAGTVHGSEKQYQNMAPRVSSSQSTMSLAPSASMEPISEWTADNNRMGKPNRSVSEPDFGRTPRQETTSPDAQEKPQASGGTSRFSRFGFGSQLLQKTVGLVLKPRSGRQAKLGDKNKFYYDEKLKRWVEEGAEVPAEEAAALTPPPTTAAFQNGSTEYNLRSALKTESSPPIEGSSIRTSSLELSPGMPLIPPSANQFSARGRLGVRSR*







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