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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16566 | AT | Annotation by Michelle Graham. TAIR10: histidine triad nucleotide-binding 4 | chr4:9334873-9335884 REVERSE LENGTH=146 | SoyBase | E_val: 2.00E-63 | ISS |
| GO:0006790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process | SoyBase | N/A | ISS |
| GO:0009117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0009150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004780 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sulfate adenylyltransferase (ADP) activity | SoyBase | N/A | ISS |
| GO:0047627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenylylsulfatase activity | SoyBase | N/A | ISS |
| KOG3275 | KOG | Zinc-binding protein of the histidine triad (HIT) family | JGI | ISS | |
| PTHR12486 | Panther | APRATAXIN-RELATED | JGI | ISS | |
| PF11969 | PFAM | Scavenger mRNA decapping enzyme C-term binding | JGI | ISS | |
| UniRef100_B6TVV1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aprataxin n=1 Tax=Zea mays RepID=B6TVV1_MAIZE | SoyBase | E_val: 1.00E-61 | ISS |
| UniRef100_C6TCG0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCG0_SOYBN | SoyBase | E_val: 4.00E-109 | ISS |
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Glyma11g03510 not represented in the dataset |
Glyma11g03510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g032300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g03510.2 sequence type=transcript gene model=Glyma11g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCAAACACACAGTACCTGTCTGAATTTTTTTTCCACTATGGGAACGCCACACGTGGCGACAGCAAAGAAAGCCAGAGCCATTAGAATTCAGAAGTTGCACCCAATGCGATGCGATTGGTAGTGTTAGGGCAAAATAATGGCGGGAGCTACTCCGTCCTGTGTTTTCTGTGCGATTGCCGCCAAATCCACCTCTAGCAATACTCTTCTTTACTCCGACGATAAGGTTGTTGCTTTTCAGGACATTAATCCATCCGCTTTCAGGCATTACTTGGTTGTTCCTGTGGCGCACATTCCTACTGTTAAATATCTTCAGAGGAAAACTGACGACTATTCTTTGGTGAGTCACATGTTAGAGGTGGGGAAGACGTTATTAAATAGAGATGCACCTCAGTCCCAGCAGTACAGATTTGGCTTTCATCAGCCTCCGCTGAACTCTGTTAACCACCTACACCTCCATTGTTTGGCGCTACCATATACACCCAGATGGCGATCTATAAAATACTTGTCTCTTGGACCACTTGGCTTCATTGAAGCAGAGAAGTTTCTGGAAAAGATAAAGCCATTGTCAGTTCAGTCAAAAGTATGACGGTCTGTTTGATTTCCGGTTACCCCAACGTGATATTGCTTTCCGATTGAAGATCAACTGTCCAGATTAATTAACTTGCAAAGTAGACACCACCAACAGATGTTCTCCTGCAGCAACATTTTTGTCTGCTCACGAAACATGGTTTGCAGTTAAAACAATCAGAGCCTAGTTAACTTGGAAGTTACTGGTTATAGTTATATTTGGTTTTTCATCCTTCCAGGATGCTAGAAAGATTGGATCTCATTCAAACTTACCTCTGTTCGGTTTGATGACAAGCAAAGTTTGTAGTTACAGTTATCGATTTGGATCTGTTGATCATAATGCCTGATATGATATCTTGACTTTCATAAGAAAAACAATAATACTGGTAACTGCTATACATTGTAACACAAGCCCTACTGACAGATATTTAGCATAACTGCTTGTGTTGGAACTCCAGATACTGTGGTGGTGAGTTTGATAAATTACCATATTATGATAACACTAGCATAGGCAAATTATCTTTTTCTCTTTTTTA
>Glyma11g03510.1 sequence type=CDS gene model=Glyma11g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGGAGCTACTCCGTCCTGTGTTTTCTGTGCGATTGCCGCCAAATCCACCTCTAGCAATACTCTTCTTTACTCCGTTCGTCTCTCTGACGATAAGGTTGTTGCTTTTCAGGACATTAATCCATCCGCTTTCAGGCATTACTTGGTTGTTCCTGTGGCGCACATTCCTACTGTTAAATATCTTCAGAGGAAAACTGACGACTATTCTTTGGTGAGTCACATGTTAGAGGTGGGGAAGACGTTATTAAATAGAGATGCACCTCAGTCCCAGCAGTACAGATTTGGCTTTCATCAGCCTCCGCTGAACTCTGTTAACCACCTACACCTCCATTGTTTGGCGCTACCATATACACCCAGATGGCGATCTATAAAATACTTGTCTCTTGGACCACTTGGCTTCATTGAAGCAGAGAAGTTTCTGGAAAAGATAAAGCCATTGTCAGTTCAGTCAAAAGTATGA >Glyma11g03510.2 sequence type=CDS gene model=Glyma11g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGGAGCTACTCCGTCCTGTGTTTTCTGTGCGATTGCCGCCAAATCCACCTCTAGCAATACTCTTCTTTACTCCGACGATAAGGTTGTTGCTTTTCAGGACATTAATCCATCCGCTTTCAGGCATTACTTGGTTGTTCCTGTGGCGCACATTCCTACTGTTAAATATCTTCAGAGGAAAACTGACGACTATTCTTTGGTGAGTCACATGTTAGAGGTGGGGAAGACGTTATTAAATAGAGATGCACCTCAGTCCCAGCAGTACAGATTTGGCTTTCATCAGCCTCCGCTGAACTCTGTTAACCACCTACACCTCCATTGTTTGGCGCTACCATATACACCCAGATGGCGATCTATAAAATACTTGTCTCTTGGACCACTTGGCTTCATTGAAGCAGAGAAGTTTCTGGAAAAGATAAAGCCATTGTCAGTTCAGTCAAAAGTATGA
>Glyma11g03510.1 sequence type=predicted peptide gene model=Glyma11g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGATPSCVFCAIAAKSTSSNTLLYSVRLSDDKVVAFQDINPSAFRHYLVVPVAHIPTVKYLQRKTDDYSLVSHMLEVGKTLLNRDAPQSQQYRFGFHQPPLNSVNHLHLHCLALPYTPRWRSIKYLSLGPLGFIEAEKFLEKIKPLSVQSKV* >Glyma11g03510.2 sequence type=predicted peptide gene model=Glyma11g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGATPSCVFCAIAAKSTSSNTLLYSDDKVVAFQDINPSAFRHYLVVPVAHIPTVKYLQRKTDDYSLVSHMLEVGKTLLNRDAPQSQQYRFGFHQPPLNSVNHLHLHCLALPYTPRWRSIKYLSLGPLGFIEAEKFLEKIKPLSVQSKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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