SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16520 | AT | Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein | chr4:9306882-9308113 REVERSE LENGTH=121 | SoyBase | E_val: 1.00E-68 | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| KOG1654 | KOG | Microtubule-associated anchor protein involved in autophagy and membrane trafficking | JGI | ISS | |
| PTHR10969 | Panther | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED | JGI | ISS | |
| PTHR10969:SF17 | Panther | AUTOPHAGY-RELATED PROTEIN 8 | JGI | ISS | |
| PF02991 | PFAM | Microtubule associated protein 1A/1B, light chain 3 | JGI | ISS | |
| UniRef100_B9SIT8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gaba(A) receptor-associated protein, putative n=1 Tax=Ricinus communis RepID=B9SIT8_RICCO | SoyBase | E_val: 7.00E-70 | ISS |
| UniRef100_I1LGN7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGN7_SOYBN | SoyBase | E_val: 2.00E-106 | ISS |
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Glyma11g03460 not represented in the dataset |
Glyma11g03460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g41910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g031800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g03460.2 sequence type=transcript gene model=Glyma11g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAATTGATTTAAATGATTTACAAATTTGGCATGATTGACTATTAGCAATGCTGCAATAGTTAAGAGAATTGCTGATTTCAGTATTAGTAAAAGGATCTGAATTTTATCTTGGTTTTTTTGTTTCTGAAAGCTTGGTTATTATGGCTGTGTATTTGCTATTCTTAGTTAGTAAAGACTAGATTTTAAGGTGTAATATACATCATTGACAATTGTCTTATGCCAGTTGACGTATTATATGGTTGGCAGCCGTATATACTACTGTCTTATGCTATGAAACTGAATGACCTACATTGCAGGTACCTTGTCCCTGCTGACTTGACTGTAGGACAGTTTGTCTATGTGATCCGCAAAAGGATTAAATTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAACGTCCTTCCTCCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGACGAGGATGGGTTTCTCTATGTTACATACAGTGGCGAGAACACCTTTGGGGATCTGATTTCCATTCAGTAGCCATTATAAATTCACACCGTTTGACCTTGTGGTCTCATTGGTCTGTCTGATAAATTTGTTATAGTACTCATGTCAAGAACCTTACTCTCGATGTTTTGTACAGTTGTATATAAATTCCGTGAACTTGATCAATATTAAAAGTTCTCTCATTCAGTCTTTCTTGGTTTTAATTGTGCATACCTTGGAATGTTCATTTTGATTGTTCATTGATATATAAATTCTCGATGTTTTGTACAGTTGTATATAAATTCCGTGAACTTGATCAATATTAAAAGTTCTCTCATTCAGTCTTCCGTGAACTCTCGATGTTTTGTACAGTTGTATATAAATTCCGTGAACTTGATCAATATTAAAAGTTCTCTCATTCAGTCTTTCTTGGTTTTAATTGTGCATACCTTGGAATGTTCATTTTGATTGTTCATTGATATATA >Glyma11g03460.3 sequence type=transcript gene model=Glyma11g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATCCATGGTATAAATCTTTTTTAATCCATATCTACGTGTTTTGTATTTGGAACCTTAAAAAGTTGATCGAAGTTATTATATAAATAGTTGTTAAAGGCACCGGTTTGTTATTTTGTTATCTTGAAGTAATCCACTCACGGGTTTCTTAGAGTTGTGATCAACTACGTTACTTCTCTCTTGGTTTTCTTGATCTCCACCTTCACCAGTTGGAATGGCAAGGAGCTACTTCAAGCAAGAACATGATCTTGAGAAGAGAAGAGCTGAGGCTGCTAGGATTAGGGAGAAATACCCTGACAGGATTCCGGTAATTGTGGAGAAGGCTGAAAGAAGTGACATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGACTTGACTGTAGGACAGTTTGTCTATGTGATCCGCAAAAGGATTAAATTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAACGTCCTTCCTCCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGACGAGGATGGGTTTCTCTATGTTACATACAGTGGCGAGAACACCTTTGGGGATCTGATTTCCATTCAGTAGCCATTATAAATTCACACCGTTTGACCTTGTGGTCTCATTGGTCTGTCTGATAAATTTGTTATAGTACTCATGTCAAGAACCTTACTCTCGATGTTTTGTACAGTTGTATATAAATTCCGTGAACTTGATCAATATTAAAAGTTCTCTCATTCAGTCTTTCTTGGTTTTAATTGTGCATACCTTGGAATGTTCATTTTGATTGTTCATTGATATATAAATTCTCGATGTTTTGTACAGTTGTATATAAATTCCGTGAACTTGATCAATATTAAAAGTTCTCTCATTCAGTCTTCCGTGAACTCTCGATGTTTTGTACAGTTGTATATAAATTCCGTGAACTTGATCAATATTAAAAGTTCTCTCATTCAGTCTTTCTTGGTTTTAATTGTGCATACCTTGGAATGTTCATTTTGATTGTTCATTGATATATA
>Glyma11g03460.1 sequence type=CDS gene model=Glyma11g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAGGAGCTACTTCAAGCAAGAACATGATCTTGGTATATACGTTTTGCCTTTTACCCCCATATCCAATTACTTGGAACTTTTGTTTTGTGAGCTAAATATTATACAAATAATCATTATGTCTGCAGAGAAGAGAAGAGCTGAGGCTGCTAGGATTAGGGAGAAATACCCTGACAGGATTCCGGTAATTGTGGAGAAGGCTGAAAGAAGTGACATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGACTTGACTGTAGGACAGTTTGTCTATGTGATCCGCAAAAGGATTAAATTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAACGTCCTTCCTCCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGACGAGGATGGGTTTCTCTATGTTACATACAGTGGCGAGAACACCTTTGGGGATCTGATTTCCATTCAGTAG >Glyma11g03460.2 sequence type=CDS gene model=Glyma11g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAGTTGACGTATTATATGGTTGGCAGCCGTATATACTACTGTCTTATGCTATGAAACTGAATGACCTACATTGCAGGTACCTTGTCCCTGCTGACTTGACTGTAGGACAGTTTGTCTATGTGATCCGCAAAAGGATTAAATTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAACGTCCTTCCTCCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGACGAGGATGGGTTTCTCTATGTTACATACAGTGGCGAGAACACCTTTGGGGATCTGATTTCCATTCAGTAG >Glyma11g03460.3 sequence type=CDS gene model=Glyma11g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAGGAGCTACTTCAAGCAAGAACATGATCTTGAGAAGAGAAGAGCTGAGGCTGCTAGGATTAGGGAGAAATACCCTGACAGGATTCCGGTAATTGTGGAGAAGGCTGAAAGAAGTGACATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGACTTGACTGTAGGACAGTTTGTCTATGTGATCCGCAAAAGGATTAAATTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAACGTCCTTCCTCCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGACGAGGATGGGTTTCTCTATGTTACATACAGTGGCGAGAACACCTTTGGGGATCTGATTTCCATTCAGTAG
>Glyma11g03460.1 sequence type=predicted peptide gene model=Glyma11g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARSYFKQEHDLGIYVLPFTPISNYLELLFCELNIIQIIIMSAEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLISIQ* >Glyma11g03460.2 sequence type=predicted peptide gene model=Glyma11g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPVDVLYGWQPYILLSYAMKLNDLHCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLISIQ* >Glyma11g03460.3 sequence type=predicted peptide gene model=Glyma11g03460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLISIQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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