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Report for Sequence Feature Glyma11g03441

Feature Type:gene_model
Chromosome:Gm11
Start:2311470
stop:2312099
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17260AT Annotation by Michelle Graham. TAIR10: Lactate/malate dehydrogenase family protein | chr4:9674057-9675309 FORWARD LENGTH=353 SoyBaseE_val: 8.00E-53ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0044262GO-bp Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004457GO-mf Annotation by Michelle Graham. GO Molecular Function: lactate dehydrogenase activity SoyBaseN/AISS
GO:0004459GO-mf Annotation by Michelle Graham. GO Molecular Function: L-lactate dehydrogenase activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016616GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
PTHR11540Panther MALATE AND LACTATE DEHYDROGENASE JGI ISS
PTHR11540:SF3Panther MALATE DEHYDROGENASE-RELATED JGI ISS
PF00056PFAM lactate/malate dehydrogenase, NAD binding domain JGI ISS
PF02866PFAM lactate/malate dehydrogenase, alpha/beta C-terminal domain JGI ISS
UniRef100_I1J9W9UniRef Annotation by Michelle Graham. Best UniRef hit: L-lactate dehydrogenase n=1 Tax=Glycine max RepID=I1J9W9_SOYBN SoyBaseE_val: 1.00E-78ISS
UniRef100_I1J9W9UniRef Annotation by Michelle Graham. Most informative UniRef hit: L-lactate dehydrogenase n=1 Tax=Glycine max RepID=I1J9W9_SOYBN SoyBaseE_val: 1.00E-78ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g03441 not represented in the dataset

Glyma11g03441 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g41920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g031600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g03441.1   sequence type=CDS   gene model=Glyma11g03441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAAGAGGAGTTCAGGTTCAGCATTGGGCCCAGGAGGCTTGGACCTAACTCAAGCCTTGTTCAAGTCCATCATGAACGCTGCACCTTCTTCTCCCACCAAGGACCACAACAAAATCTCCGTTGTTGGGGCAGGCAACGTGGGAATGGCCATAGCCCAAACCATCTCACTCAGGATCTCACCGACGACGATGAGATTCCTGACAAACACCACGGTGAGATGCTGGACCTCCAGCACGCCGCGGCCTTCCTCCCCGGCCATCTCCACACTCTTTGAGAAAATCATACCTCCTTTGGTCCGTTACTCCCCAGACACCATTCTTCTCATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAGCTTTCGGGGTTCCCTTCAAACCACGTCATTGGCTATGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCTCAAGATGTCCAGGCTTTTATAGTGGGGGAACATGGTGACAGCTCAGTGGTCTAG

>Glyma11g03441.1   sequence type=predicted peptide   gene model=Glyma11g03441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHKRSSGSALGPGGLDLTQALFKSIMNAAPSSPTKDHNKISVVGAGNVGMAIAQTISLRISPTTMRFLTNTTVRCWTSSTPRPSSPAISTLFEKIIPPLVRYSPDTILLIVSNPVDVLTYVAWKLSGFPSNHVIGYGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVV*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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