SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04590 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:1258760-1261411 REVERSE LENGTH=381 | SoyBase | E_val: 5.00E-94 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_G7JVZ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JVZ5_MEDTR | SoyBase | E_val: 3.00E-121 | ISS |
| UniRef100_I1LGM9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGM9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g03380 not represented in the dataset |
Glyma11g03380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g031000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g03380.2 sequence type=transcript gene model=Glyma11g03380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCAAAATTCTAAAATACTTGTAAAATCAATAGTCCTAAATATGATTGCCTTTTTTTTAATTTATTCAATATATTATATGAGACCCAAAAAAGAGGCCAAGAAAAACCGGGAATTGTAATGGGCCTAATTAACCGGGCCCAGTCAGAGCAGAGGAAGAAACGAGAGAGAGGCGGCTTGAGTTGGTTTCGTCCGTGAGCGTGAAGCACAGCAGCATGTGGAAGTTGAGGTCAGCTCGAATCTCTTATCTGCTTTGTAGATTGAGTCAAATCAAAGTAAGCGAAGCCCAGATTAAGCACCACCGTTTCTGTCACAGTCAAGTGTCGTCGACACAGTGTGATCCTCCTCACACCGCAGTTCCCAGGAATTATATTGGGGAAAATGTATCTAGAAAAGATAAGAACAAATATCTTTACACTACGCTTCTTGAACTCAACGACAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAGCAAAACTTCCCCATCGCCTCATTGAAAACAATATTGATTTCTCTTGAGAAGGACCAGCAGTGGCATAGGGTTGTGCAGGTAATTAAATGGATGCTGAGCAAAGGACAGGGGATGACAATGGGCACATATGGTCAACTGATACGAGCTTTAGATATGGACCATAGAGTCGAAGAAGCTCAGAAATTCTGGGAAATCAAAATTGGTTCTGATTTGCATTCAGTTCCTTGGCAATTGTGTCATCTCATGATATCTGTTTATTATCGAAACAACATGCTCCAAGATCTTGTTAAGCTTTTCAAGGGACTGGAAGCTTTTGATCGAAAACCTCGGGATAAATCTATCATTCAGAAAGTGGCAAATGCATATGAGGTGTTAGGCTTAGTTAAAGAGAAAGAGAGGGTACTGGAAAAATATAACCATCTCTTCACAGAGACAGGACCAACCAAGAGACATAAAAGGAACTCATTTGAGGCAAAGAAACATGTGCATCCTACAAAAGAGAAAAGGCATCAGAAGCAATCTAGAAAGGCCTCATCTGAGGAAAAGTACAAGTCAGAGCAAAAAGATCCAAAATTGGATATTGGACATATCTAGTGCACTCTTTTCTGATGCCATGATGGTATTATGATATGATAGTAGACCAAAGTGCCTCCATGTTCAAGTATTCTGCTAACCTATGTGGGAAGCCCATCAAGGCTAGAAGTGCAGCTTGATGAAACGGAACCAAATGTATGTCACCTATGGACGTCAAAAGCTGTTTCAAATTTATATACCAAAAGAAAAATGCTTTTCCAAGTTTGCTGCACGGTTTATAGATTTAGTTATTGGACTACGGAAGTCCAGAGGCCATCATGTGTGAAGTGTGAACATTTTTATTCAGTGAACATTTGTCCTAAATTAACTCAAATCCTTGTTATGTAATTATTTATTTTCCAATCTTTTAGACAAGCTACCAATCCATGCTATGTAACTATTATTTAAAGGGAAACATTGAAAAACAAAATAACTAGTCATCACATTGCCATCACATGTTTATTAAAAGAATCGGTAAAAGCGTAATGAACATATGATAATATTTACTTTTTTAAAAATA
>Glyma11g03380.1 sequence type=CDS gene model=Glyma11g03380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGAAGTTGAGGTCAGCTCGAATCTCTTATCTGCTTTGTAGATTGAGTCAAATCAAAGTAAGCGAAGCCCAGATTAAGCACCACCGTTTCTGTCACAGTCAAGTGTCGTCGGTATTGCCTCCTCCATCTAATTTGCAACACCAACAGACACAGTGTGATCCTCCTCACACCGCAGTTCCCAGGAATTATATTGGGGAAAATGTATCTAGAAAAGATAAGAACAAATATCTTTACACTACGCTTCTTGAACTCAACGACAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAGCAAAACTTCCCCATCGCCTCATTGAAAACAATATTGATTTCTCTTGAGAAGGACCAGCAGTGGCATAGGGTTGTGCAGGTAATTAAATGGATGCTGAGCAAAGGACAGGGGATGACAATGGGCACATATGGTCAACTGATACGAGCTTTAGATATGGACCATAGAGTCGAAGAAGCTCAGAAATTCTGGGAAATCAAAATTGGTTCTGATTTGCATTCAGTTCCTTGGCAATTGTGTCATCTCATGATATCTGTTTATTATCGAAACAACATGCTCCAAGATCTTGTTAAGCTTTTCAAGGGACTGGAAGCTTTTGATCGAAAACCTCGGGATAAATCTATCATTCAGAAAGTGGCAAATGCATATGAGGTGTTAGGCTTAGTTAAAGAGAAAGAGAGGGTACTGGAAAAATATAACCATCTCTTCACAGAGACAGGACCAACCAAGAGACATAAAAGGAACTCATTTGAGGCAAAGAAACATGTGCATCCTACAAAAGAGAAAAGGCATCAGAAGCAATCTAGAAAGGCCTCATCTGAGGAAAAGTACAAGTCAGAGCAAAAAGATCCAAAATTGGATATTGGACATATCTAG >Glyma11g03380.2 sequence type=CDS gene model=Glyma11g03380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGAAGTTGAGGTCAGCTCGAATCTCTTATCTGCTTTGTAGATTGAGTCAAATCAAAGTAAGCGAAGCCCAGATTAAGCACCACCGTTTCTGTCACAGTCAAGTGTCGTCGACACAGTGTGATCCTCCTCACACCGCAGTTCCCAGGAATTATATTGGGGAAAATGTATCTAGAAAAGATAAGAACAAATATCTTTACACTACGCTTCTTGAACTCAACGACAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAGCAAAACTTCCCCATCGCCTCATTGAAAACAATATTGATTTCTCTTGAGAAGGACCAGCAGTGGCATAGGGTTGTGCAGGTAATTAAATGGATGCTGAGCAAAGGACAGGGGATGACAATGGGCACATATGGTCAACTGATACGAGCTTTAGATATGGACCATAGAGTCGAAGAAGCTCAGAAATTCTGGGAAATCAAAATTGGTTCTGATTTGCATTCAGTTCCTTGGCAATTGTGTCATCTCATGATATCTGTTTATTATCGAAACAACATGCTCCAAGATCTTGTTAAGCTTTTCAAGGGACTGGAAGCTTTTGATCGAAAACCTCGGGATAAATCTATCATTCAGAAAGTGGCAAATGCATATGAGGTGTTAGGCTTAGTTAAAGAGAAAGAGAGGGTACTGGAAAAATATAACCATCTCTTCACAGAGACAGGACCAACCAAGAGACATAAAAGGAACTCATTTGAGGCAAAGAAACATGTGCATCCTACAAAAGAGAAAAGGCATCAGAAGCAATCTAGAAAGGCCTCATCTGAGGAAAAGTACAAGTCAGAGCAAAAAGATCCAAAATTGGATATTGGACATATCTAG
>Glyma11g03380.1 sequence type=predicted peptide gene model=Glyma11g03380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWKLRSARISYLLCRLSQIKVSEAQIKHHRFCHSQVSSVLPPPSNLQHQQTQCDPPHTAVPRNYIGENVSRKDKNKYLYTTLLELNDSKEAVYGALDAWVAWEQNFPIASLKTILISLEKDQQWHRVVQVIKWMLSKGQGMTMGTYGQLIRALDMDHRVEEAQKFWEIKIGSDLHSVPWQLCHLMISVYYRNNMLQDLVKLFKGLEAFDRKPRDKSIIQKVANAYEVLGLVKEKERVLEKYNHLFTETGPTKRHKRNSFEAKKHVHPTKEKRHQKQSRKASSEEKYKSEQKDPKLDIGHI* >Glyma11g03380.2 sequence type=predicted peptide gene model=Glyma11g03380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWKLRSARISYLLCRLSQIKVSEAQIKHHRFCHSQVSSTQCDPPHTAVPRNYIGENVSRKDKNKYLYTTLLELNDSKEAVYGALDAWVAWEQNFPIASLKTILISLEKDQQWHRVVQVIKWMLSKGQGMTMGTYGQLIRALDMDHRVEEAQKFWEIKIGSDLHSVPWQLCHLMISVYYRNNMLQDLVKLFKGLEAFDRKPRDKSIIQKVANAYEVLGLVKEKERVLEKYNHLFTETGPTKRHKRNSFEAKKHVHPTKEKRHQKQSRKASSEEKYKSEQKDPKLDIGHI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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