SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60670 | AT | Annotation by Michelle Graham. TAIR10: PLATZ transcription factor family protein | chr3:22424695-22426074 REVERSE LENGTH=245 | SoyBase | E_val: 6.00E-56 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PF04640 | PFAM | PLATZ transcription factor | JGI | ISS | |
| UniRef100_B9RD80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9RD80_RICCO | SoyBase | E_val: 4.00E-63 | ISS |
| UniRef100_I1LGM8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGM8_SOYBN | SoyBase | E_val: 3.00E-144 | ISS |
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Glyma11g03370 not represented in the dataset |
Glyma11g03370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g030900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g03370.2 sequence type=CDS gene model=Glyma11g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTGGGTTCAACTCAGTTCCTAATTGGCTTCTCATTCTTAAGGAAGAGAAGTTTTTTACTCGCTGTTTGATTCATCACTCTGTAAAGAAGAACGAGAAGAACATTTTCTGCTTAGATTGCTGCACAAGCATTTGCCTCCACTGCTTGCCCTTTCACCGCTCTCACGTCCTTTTGCAGATAAGAAGATACATGTACAATGACGTATTACGCCTTGGTGATGCTCAGACATTGTTGAATTGTTCCCTTGTTCAACCGTACACAACAAATAAAACTAAGGTTGTATTTTTGAAACAAAGGCCTCCCACCGGCTCTCACAGAGGCTCGAGCAACATTTGCATCACATGTGACCGTAACCTCCAAGACCCATACATCTTCTGCTCTGTCTCATGCAAGGTGCATCAACATGTTCTACTAATTACCAAAAGCACAAGCATAAAGGACACTTGGAACAAGCATGAATTCTCTGTGCTACTAGACAAAGAAAGAAGCAGCGAGAACCACCAAGAAATAGAAGATAGCCAAATCACAACAGATTCAGTCCTAGACTCACACTCACCCACGTCGACATCGTTATGCACCGTGTCTGGATCAACAAGTACTAATAGTGGGAGTGTGACAGAGAATGAGTCACTAAAAAAGAAACGTGGTAGTGTTGACATGGTGCCAGAGATTTGGTACACAATGGTGAACCGCCGAAAAGGAGTCCCTCATCGATCTCCATTCTACTGA
>Glyma11g03370.2 sequence type=predicted peptide gene model=Glyma11g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGFNSVPNWLLILKEEKFFTRCLIHHSVKKNEKNIFCLDCCTSICLHCLPFHRSHVLLQIRRYMYNDVLRLGDAQTLLNCSLVQPYTTNKTKVVFLKQRPPTGSHRGSSNICITCDRNLQDPYIFCSVSCKVHQHVLLITKSTSIKDTWNKHEFSVLLDKERSSENHQEIEDSQITTDSVLDSHSPTSTSLCTVSGSTSTNSGSVTENESLKKKRGSVDMVPEIWYTMVNRRKGVPHRSPFY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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