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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12250 | AT | Annotation by Michelle Graham. TAIR10: Pentapeptide repeat-containing protein | chr1:4159623-4161269 FORWARD LENGTH=206 | SoyBase | E_val: 2.00E-127 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009543 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF00805 | PFAM | Pentapeptide repeats (8 copies) | JGI | ISS | |
| UniRef100_G7KG97 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Thylakoid lumenal protein n=1 Tax=Medicago truncatula RepID=G7KG97_MEDTR | SoyBase | E_val: 3.00E-157 | ISS |
| UniRef100_I1LGM5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGM5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g03350 not represented in the dataset |
Glyma11g03350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g42001 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g030700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g03350.2 sequence type=transcript gene model=Glyma11g03350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGAAAAAATATTAAATAAAACGTGAGAGTGACAAATTTCTCTAAAAATAATCCAACTGTAATAATACTAGAGAGCAGAGCAATTGGGCTATGTGGTGTTACCAGAAAGCAGATAAGACTTGAACACGTGTGCTACTACTTACCACTTCTCCATGAATTACTGAACTGCGAGCTCCCTCCAATTCGCTTCTCCTTCTTCTTCATTCCTTGGCAGTACACAAATCTGTCATATCTTGCTGCTCGATCGTTACGATGATGGCGCTCAATTCATTGTCACCACTTTCAATTAATTCTCTTCACGTATCTTCAAGCTCAACTTCAAAGATTTCGCATTCTCATTCCAAGTCCTTTCCCGTCGTTGTGTGCCAAATTAACTCAAACAGAGATCATCGTCAAGAATCCACAAAATGGGGAAAAGTGGTTTCGGCCACGTTGGCGGCTGCTGTTATTGCCTTCAGCTCTGACATGTCTGCCCTTGCTGATCTCAACAAATTTGAGGCTGAAATGAGGGGTGAATTTGGAATAGGATCGGCTGCGCAGTTTGGCTCTGCTGACCTCAGGAAAGCGGTGCATGTCAATGAAAATTTCAGAAGAGCCAATTTCACAGCTGCTGATATGAGAGAATCTGATTTTAGTGGTTCAACTTTCAATGGTGCATACCTTGAGAAAGCTGTTGCATACAAGGCAAACTTTTCAGGTGCTGATTTAAGTGATACATTGATGGATCGCATGTCCTCACACGGAGTGACCTTGGGGGAGCCATCATCGAAGGTGCTGACTTTAGTGATGCTGTGTTGGATCTTCCTCAAAAGCAGGCGCTATGCAAGTATGCTAGTGGCACAAATCCTGTGACAGGAGTAAGCACAAGAGTAAGCTTAGGTTGTGGGAACAAACGACGAAATGCATATGGCTCCCCGTCATCTCCCCTTTTAAGTGCTCCACCACAGAAACTGCTTGACCGAGACGGTTTTTGTGATGATGCAACAGGACTTTGCGATGCAAAGTAGTAACTAGTTGTAATATTTGCTACAAGGCCATATTCGTGTAAATATATCAGAGACTACAATTGAGGCCTCTATTTGCCTTTGCATTTCTGAGAGCATATCCGCATTCAACAAATGATGCCCTCTCTTGAATCTATGTTGGATATTGCTGGTCTCTGTTTAGCAAGCCAGAACCTATTTTGTCCAGCCACTTTCTCCTATGTAAGATCTACGGGATATAAAATGATGCTTCGTGTTCATAATTTCTCACCCATTTGCCACAAAACTTTAATGAACCATGTAAGTCCAATTTCTTGTTTAAATTTATATTACACAAACACACTCACATTCTCTCTTATAGATGTTAATATTCGTCGGAGATCGAATTCAACTATTGGAATTCTTCTATGAAATAGGCATCTT
>Glyma11g03350.1 sequence type=CDS gene model=Glyma11g03350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGCGCTCAATTCATTGTCACCACTTTCAATTAATTCTCTTCACGTATCTTCAAGCTCAACTTCAAAGATTTCGCATTCTCATTCCAAGTCCTTTCCCGTCGTTGTGTGCCAAATTAACTCAAACAGAGATCATCGTCAAGAATCCACAAAATGGGGAAAAGTGGTTTCGGCCACGTTGGCGGCTGCTGTTATTGCCTTCAGCTCTGACATGTCTGCCCTTGCTGATCTCAACAAATTTGAGGCTGAAATGAGGGGTGAATTTGGAATAGGATCGGCTGCGCAGTTTGGCTCTGCTGACCTCAGGAAAGCGGTGCATGTCAATGAAAATTTCAGAAGAGCCAATTTCACAGCTGCTGATATGAGAGAATCTGATTTTAGTGGTTCAACTTTCAATGGTGCATACCTTGAGAAAGCTGTTGCATACAAGGCAAACTTTTCAGGTGCTGATTTAAGTGATACATTGATGGATCGCATGGTTCTAAATGAAGCCAATCTCACTAATGCCATTCTCCTTAGAACAGTCCTCACACGGAGTGACCTTGGGGGAGCCATCATCGAAGGTGCTGACTTTAGTGATGCTGTGTTGGATCTTCCTCAAAAGCAGGCGCTATGCAAGTATGCTAGTGGCACAAATCCTGTGACAGGAGTAAGCACAAGAGTAAGCTTAGGTTGTGGGAACAAACGACGAAATGCATATGGCTCCCCGTCATCTCCCCTTTTAAGTGCTCCACCACAGAAACTGCTTGACCGAGACGGTTTTTGTGATGATGCAACAGGACTTTGCGATGCAAAGTAG >Glyma11g03350.2 sequence type=CDS gene model=Glyma11g03350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGCGCTCAATTCATTGTCACCACTTTCAATTAATTCTCTTCACGTATCTTCAAGCTCAACTTCAAAGATTTCGCATTCTCATTCCAAGTCCTTTCCCGTCGTTGTGTGCCAAATTAACTCAAACAGAGATCATCGTCAAGAATCCACAAAATGGGGAAAAGTGGTTTCGGCCACGTTGGCGGCTGCTGTTATTGCCTTCAGCTCTGACATGTCTGCCCTTGCTGATCTCAACAAATTTGAGGCTGAAATGAGGGGTGAATTTGGAATAGGATCGGCTGCGCAGTTTGGCTCTGCTGACCTCAGGAAAGCGGTGCATGTCAATGAAAATTTCAGAAGAGCCAATTTCACAGCTGCTGATATGAGAGAATCTGATTTTAGTGGTTCAACTTTCAATGGTGCATACCTTGAGAAAGCTGTTGCATACAAGGCAAACTTTTCAGGTGCTGATTTAAGTGATACATTGATGGATCGCATGTCCTCACACGGAGTGACCTTGGGGGAGCCATCATCGAAGGTGCTGACTTTAGTGATGCTGTGTTGGATCTTCCTCAAAAGCAGGCGCTATGCAAGTATGCTAGTGGCACAAATCCTGTGA
>Glyma11g03350.1 sequence type=predicted peptide gene model=Glyma11g03350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMALNSLSPLSINSLHVSSSSTSKISHSHSKSFPVVVCQINSNRDHRQESTKWGKVVSATLAAAVIAFSSDMSALADLNKFEAEMRGEFGIGSAAQFGSADLRKAVHVNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAILLRTVLTRSDLGGAIIEGADFSDAVLDLPQKQALCKYASGTNPVTGVSTRVSLGCGNKRRNAYGSPSSPLLSAPPQKLLDRDGFCDDATGLCDAK* >Glyma11g03350.2 sequence type=predicted peptide gene model=Glyma11g03350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMALNSLSPLSINSLHVSSSSTSKISHSHSKSFPVVVCQINSNRDHRQESTKWGKVVSATLAAAVIAFSSDMSALADLNKFEAEMRGEFGIGSAAQFGSADLRKAVHVNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMSSHGVTLGEPSSKVLTLVMLCWIFLKSRRYASMLVAQIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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