Glyma11g03330 - SoyBase

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Report for Sequence Feature Glyma11g03330

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2195844
stop:	2200604
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g03330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12400	AT	Annotation by Michelle Graham. TAIR10: stress-inducible protein, putative \| chr4:7338866-7341239 REVERSE LENGTH=558	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
KOG0548	KOG	Molecular co-chaperone STI1	JGI		ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PTHR22904:SF14	Panther	STRESS-INDUCED-PHOSPHOPROTEIN 1 (STI1) (HSC70/HSP9	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_G7KG90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Stress-induced-phosphoprotein n=2 Tax=Medicago truncatula RepID=G7KG90_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LGM2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGM2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g03330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g03330 not represented in the dataset	Glyma11g03330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g03330

Paralog	Evidence	Comments
Glyma01g42010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g03330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g030500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g03330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g03330

Limit To All Plant Sequences

>Glyma11g03330.2   sequence type=transcript   gene model=Glyma11g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTACTTGTATTGGTTGGATTTCCAAACAAGTAGTGATGCTGGTAGAACATTCCAGAACCCCTCTCTTCCCGCATCCGAGAACTCTCTAGTTGTACTTTTCGTTTTCTATAAGCCCTTCCGGCTCTCCTTATTTTTCCCACTTCATCCAATCAAATCAAATCAAAGTCATTCACCTAAACCCTATGGCCGACGAAGCCAAAGCCAAAGGCAACGCAGCCTTCTCCTCCGGCGACTACCCCGCCGCAATTCACCACTTCTCCGACGCCATCGCCTTGGCCCCCACCAACCACGTCCTCTATTCCAATCGATCCGCCGCATACGCTTCTCTCCAAAACTACACCGATGCCTTAGCCGATGCTAAGAAGACCGTTGAACTCAAGCCCGACTGGTCCAAGGGCTACAGCCGTCTCGGCGCTGCGCATCTTGGCCTTTCCCAATACGGCGACGCCGTTTCCGCTTACGAAAAGGGACTCAAAATCGACCCTAATAACGAGCCCCTCAAGTCGGGTTTGGCCGATGCGCAGAAGGCCCTGGCCGCGGCCTCTAGGCCCCGCTCCTCGGCTGCTAATCCTTTTGGTGACGCTTTCTCTGGGCCTGAGATGTGGGCCCGTCTCACGGCGGACCCCACCACTAGGGCTTACCTTCAACAGCCAGATTTCGTGAAGATGATGCAGGATATCCAGAGAGATCCTAACAACCTCAACTTGCACTTGAAGGACCAGAGAATCATGCAGGCCCTAGGGGTTTTGCTCAACGTCAAGATTCAAACACCTCCCACGGGGGCTGACACCGATATGCCGGATTCTCCGTCGCCCTCTGCGGCCGCGTCTGAGAGGAAGAGAGCTGCGGAAGCTGAGCCTGCAAAGCAGCCCGAGTCTGAACCCGAGCCCGAGCCCGAGTCCATGGAATTGACTGGGGAGGAGAAGGGCGCGAAGCAGAGAAAGGCCGAGGCTCTGAAGGAAAAGGATGCGGGAAATGCAGCTTATAAGAAGAAGGATTTTGATACCGCGATTCAACATTACACAAAGGCTTTGGAGTTGGATGATGAGGATATTTCGTATCTCACTAACCGCGCTGCTGTCTACTTGGAAATGGGAAAGTATGAGGAATGCATAAAAGATTGTGACAAGGCTGTTGAAAGAGGAAGAGAACTAAGATCAGATTTTAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAAATGCCTTGGTGAAATTGGCGAAGTGCTCAAAGGATTATGAGCCTGCCATTGAGACATACCAGAAAGCACTCACCGAGCACCGCAACCCTGACACTTTAAAGAAACTTAATGAAGCCGAAAAGGCAAAGAAAGAACTAGAACAACAGGAATATTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAAAAAGGAAACGAATTCTTCAAGCAGCAGAAGTATCCTGAGGCTGTGAAGCATTACACAGAGTCTATACGAAGAAATCCAAAAGATCCTAGGGCTTATAGTAACAGAGCAGCATGCTACACTAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAACTTGATCCAACCTTCGTAAAGGGTTATACCAGGAAAGGTGCAGTCCAGTATTTCATGAAGGAATACGAGAAGTCTTTGGAGACATATAGGGAGGGGTTGAAATATGACTCTAACAACCAGGAGTTGCTTGAAGGCATTAGAACATGCATACAACAAATTAACAAGGCTAGCCGTGGAGACTTAAGTCCTGAGGAATTGAAGGAGAGACAGGCCAAGGCAATGCAGGATCCCGAAATTCAAAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGATTGATTTCCAAGAAAATCCCAAGGCTGCACAGGAACACACGAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGGTCAGTGCTGGAATTGTCCAAATGAAGTAAATTTGTTGCAGGTGGCAGTTCGTGTGAAAAAGTAATCGGCAATGATGTCTCAGTGTGACTATTTTGACATTTAAATAGGATTTTGATTGGGGAAAAAGTTGGGAAATTTTGAGTTGTTTTTACCTTCGTTTTGTTTTAGTGAATTCATATAATTTACGAGTATCAAGTGCCAGTCCATTTTTATATTTAATTGGCTTATTGTGGTGACATGACTTTCTTTTAATTTAAATCGATGGGGGGCGAACTTGAAGTGTGGTTTAGTTTTTAAGGTTAATAATTCTAAATCCTCTTTATCCTATCCTTTTAATAGTGCTTCTATCTATCTTTTTATTGATCTTCTTTTCTATGATAAATATTAATGCGTTTTATATTTTCAAGAAATTGTGTTTTATATAATTTTATTTAATATTTTCTATAAAGAAGCTGAAGGATTGGGGGGAAG

Coding sequences of Glyma11g03330

Limit To All Plant Sequences

>Glyma11g03330.1   sequence type=CDS   gene model=Glyma11g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCAGCCTTCTCCTCCGGCGACTACCCCGCCGCAATTCACCACTTCTCCGACGCCATCGCCTTGGCCCCCACCAACCACGTCCTCTATTCCAATCGATCCGCCGCATACGCTTCTCTCCAAAACTACACCGATGCCTTAGCCGATGCTAAGAAGACCGTTGAACTCAAGCCCGACTGGTCCAAGGGCTACAGCCGTCTCGGCGCTGCGCATCTTGGCCTTTCCCAATACGGCGACGCCGTTTCCGCTTACGAAAAGGGACTCAAAATCGACCCTAATAACGAGCCCCTCAAGTCGGGTTTGGCCGATGCGCAGAAGGCCCTGGCCGCGGCCTCTAGGCCCCGCTCCTCGGCTGCTAATCCTTTTGGTGACGCTTTCTCTGGGCCTGAGATGTGGGCCCGTCTCACGGCGGACCCCACCACTAGGGCTTACCTTCAACAGCCAGATTTCGTGAAGATGATGCAGGATATCCAGAGAGATCCTAACAACCTCAACTTGCACTTGAAGGACCAGAGAATCATGCAGGCCCTAGGGGTTTTGCTCAACGTCAAGATTCAAACACCTCCCACGGGGGCTGACACCGATATGCCGGATTCTCCGTCGCCCTCTGCGGCCGCGTCTGAGAGGAAGAGAGCTGCGGAAGCTGAGCCTGCAAAGCAGCCCGAGTCTGAACCCGAGCCCGAGCCCGAGTCCATGGAATTGACTGGGGAGGAGAAGGGCGCGAAGCAGAGAAAGGCCGAGGCTCTGAAGGAAAAGGATGCGGGAAATGCAGCTTATAAGAAGAAGGATTTTGATACCGCGATTCAACATTACACAAAGGCTTTGGAGTTGGATGATGAGGATATTTCGTATCTCACTAACCGCGCTGCTGTCTACTTGGAAATGGGAAAGTATGAGGAATGCATAAAAGATTGTGACAAGGCTGTTGAAAGAGGAAGAGAACTAAGATCAGATTTTAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAAATGCCTTGGTGAAATTGGCGAAGTGCTCAAAGGATTATGAGCCTGCCATTGAGACATACCAGAAAGCACTCACCGAGCACCGCAACCCTGACACTTTAAAGAAACTTAATGAAGCCGAAAAGGCAAAGAAAGAACTAGAACAACAGGAATATTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAAAAAGGAAACGAATTCTTCAAGCAGCAGAAGTATCCTGAGGCTGTGAAGCATTACACAGAGTCTATACGAAGAAATCCAAAAGATCCTAGGGCTTATAGTAACAGAGCAGCATGCTACACTAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAACTTGATCCAACCTTCGTAAAGGGTTATACCAGGAAAGGTGCAGTCCAGTATTTCATGAAGGAATACGAGAAGTCTTTGGAGACATATAGGGAGGGGTTGAAATATGACTCTAACAACCAGGAGTTGCTTGAAGGCATTAGAACATGCATACAACAAATTAACAAGGCTAGCCGTGGAGACTTAAGTCCTGAGGAATTGAAGGAGAGACAGGCCAAGGCAATGCAGGATCCCGAAATTCAAAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGATTGATTTCCAAGAAAATCCCAAGGCTGCACAGGAACACACGAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGGTCAGTGCTGGAATTGTCCAAATGAAGTAA

>Glyma11g03330.2   sequence type=CDS   gene model=Glyma11g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCAGCCTTCTCCTCCGGCGACTACCCCGCCGCAATTCACCACTTCTCCGACGCCATCGCCTTGGCCCCCACCAACCACGTCCTCTATTCCAATCGATCCGCCGCATACGCTTCTCTCCAAAACTACACCGATGCCTTAGCCGATGCTAAGAAGACCGTTGAACTCAAGCCCGACTGGTCCAAGGGCTACAGCCGTCTCGGCGCTGCGCATCTTGGCCTTTCCCAATACGGCGACGCCGTTTCCGCTTACGAAAAGGGACTCAAAATCGACCCTAATAACGAGCCCCTCAAGTCGGGTTTGGCCGATGCGCAGAAGGCCCTGGCCGCGGCCTCTAGGCCCCGCTCCTCGGCTGCTAATCCTTTTGGTGACGCTTTCTCTGGGCCTGAGATGTGGGCCCGTCTCACGGCGGACCCCACCACTAGGGCTTACCTTCAACAGCCAGATTTCGTGAAGATGATGCAGGATATCCAGAGAGATCCTAACAACCTCAACTTGCACTTGAAGGACCAGAGAATCATGCAGGCCCTAGGGGTTTTGCTCAACGTCAAGATTCAAACACCTCCCACGGGGGCTGACACCGATATGCCGGATTCTCCGTCGCCCTCTGCGGCCGCGTCTGAGAGGAAGAGAGCTGCGGAAGCTGAGCCTGCAAAGCAGCCCGAGTCTGAACCCGAGCCCGAGCCCGAGTCCATGGAATTGACTGGGGAGGAGAAGGGCGCGAAGCAGAGAAAGGCCGAGGCTCTGAAGGAAAAGGATGCGGGAAATGCAGCTTATAAGAAGAAGGATTTTGATACCGCGATTCAACATTACACAAAGGCTTTGGAGTTGGATGATGAGGATATTTCGTATCTCACTAACCGCGCTGCTGTCTACTTGGAAATGGGAAAGTATGAGGAATGCATAAAAGATTGTGACAAGGCTGTTGAAAGAGGAAGAGAACTAAGATCAGATTTTAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAAATGCCTTGGTGAAATTGGCGAAGTGCTCAAAGGATTATGAGCCTGCCATTGAGACATACCAGAAAGCACTCACCGAGCACCGCAACCCTGACACTTTAAAGAAACTTAATGAAGCCGAAAAGGCAAAGAAAGAACTAGAACAACAGGAATATTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAAAAAGGAAACGAATTCTTCAAGCAGCAGAAGTATCCTGAGGCTGTGAAGCATTACACAGAGTCTATACGAAGAAATCCAAAAGATCCTAGGGCTTATAGTAACAGAGCAGCATGCTACACTAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAACTTGATCCAACCTTCGTAAAGGGTTATACCAGGAAAGGTGCAGTCCAGTATTTCATGAAGGAATACGAGAAGTCTTTGGAGACATATAGGGAGGGGTTGAAATATGACTCTAACAACCAGGAGTTGCTTGAAGGCATTAGAACATGCATACAACAAATTAACAAGGCTAGCCGTGGAGACTTAAGTCCTGAGGAATTGAAGGAGAGACAGGCCAAGGCAATGCAGGATCCCGAAATTCAAAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGATTGATTTCCAAGAAAATCCCAAGGCTGCACAGGAACACACGAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGGTCAGTGCTGGAATTGTCCAAATGAAGTAA

Predicted protein sequences of Glyma11g03330

Limit To All Plant Sequences

>Glyma11g03330.1   sequence type=predicted peptide   gene model=Glyma11g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADEAKAKGNAAFSSGDYPAAIHHFSDAIALAPTNHVLYSNRSAAYASLQNYTDALADAKKTVELKPDWSKGYSRLGAAHLGLSQYGDAVSAYEKGLKIDPNNEPLKSGLADAQKALAAASRPRSSAANPFGDAFSGPEMWARLTADPTTRAYLQQPDFVKMMQDIQRDPNNLNLHLKDQRIMQALGVLLNVKIQTPPTGADTDMPDSPSPSAAASERKRAAEAEPAKQPESEPEPEPESMELTGEEKGAKQRKAEALKEKDAGNAAYKKKDFDTAIQHYTKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGNALVKLAKCSKDYEPAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAVKHYTESIRRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMKEYEKSLETYREGLKYDSNNQELLEGIRTCIQQINKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLIDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQMK*

>Glyma11g03330.2   sequence type=predicted peptide   gene model=Glyma11g03330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADEAKAKGNAAFSSGDYPAAIHHFSDAIALAPTNHVLYSNRSAAYASLQNYTDALADAKKTVELKPDWSKGYSRLGAAHLGLSQYGDAVSAYEKGLKIDPNNEPLKSGLADAQKALAAASRPRSSAANPFGDAFSGPEMWARLTADPTTRAYLQQPDFVKMMQDIQRDPNNLNLHLKDQRIMQALGVLLNVKIQTPPTGADTDMPDSPSPSAAASERKRAAEAEPAKQPESEPEPEPESMELTGEEKGAKQRKAEALKEKDAGNAAYKKKDFDTAIQHYTKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGNALVKLAKCSKDYEPAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAVKHYTESIRRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMKEYEKSLETYREGLKYDSNNQELLEGIRTCIQQINKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLIDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQMK*

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