SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G62780 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:23249349-23251066 REVERSE LENGTH=237 | SoyBase | E_val: 5.00E-116 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1LGM0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGM0_SOYBN | SoyBase | E_val: 2.00E-174 | ISS |
| UniRef100_Q01HW7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: B0616E02-H0507E05.5 protein n=2 Tax=Oryza sativa RepID=Q01HW7_ORYSA | SoyBase | E_val: 2.00E-76 | ISS |
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Glyma11g03320 not represented in the dataset |
Glyma11g03320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g42040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g030400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g03320.2 sequence type=transcript gene model=Glyma11g03320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTACCCTTTGCGAACTATGAAAGGATAATGCAAATTTGATAGAGAGTTTATCGAGTGGCCCTGCAGGTGGAATCTCAATGGCCACGCTTAGCTTCGGCATCGCCACGACATGTCTGAGTGCTGCCGCTGATTATCGTAGAAGAAGCAACTGGAAATGGAGCAGACCCAGAATTGTGTGTGTTGGATGGGACCCGGAAGGCGTGCTTGGTCCACCCCAAACTGGGCACCTCGCCAGGTTCGAGTTTAAGAGGCGCCTCGAGAGAGACGCAGATGCCCGCGAAGCCTTCCAACGTCAAGTCCGTGAAGAGAAAGAACGCCGTCAATCCCTTCGACAATCTCGTCCTCTTCCCGATACTCCGCAAGACCTCATTGAATACTTCCTTGACACTGAAGCTCAGGAGATTGAGTTTGAGATTGCAAGAATGAGACCAAGATTGAATGAGGAATTCTTTGCGCAACTCAAATTCGAGTTAGGACAGCTTCGATTCGCTGTTAACAAAACACAGCTCATGGAGGACAGACAGATTGAGCTGGAGGCTCTAGAGAAAGCCATACTAGAAGGATTAGAAGCCTATGATAAGATGCAAGGTGAACTCGTAAAAGCCAGGGCAAGCCTAACCAAAATCTTGACATCAAAGGATGCCAAAGCAACTTTGCTGGAGATGGTTGAAAAGAATGAAATTAATAGATCTTTATTGGCACTTCTAGATGAAAACATAGCAAGTGCACAAAAGGGCAACCAGGCTGCAGAATATATGGAGAAGCTCCGCGGGGCTGTTCTTCGGTACATTACAGTTTAGTGCATATAGTACGTTTCTTCCCACTTTACTATTAAGTTTTGTGAAAATTGTGCTGTTGATCAGAAAGACAATACTAAAGAACTGGGATGTTGTGGTAGCAGATTTCTCCACTGTAATATCAGAAGTATCAAATTGTACATTTTGATACGACTTGTGCATCTTTTGTTGAAATTTTTATGAAAATTGATTTTAAAATCGCAATATACAGCAGTACAGTTCATGTTATGAACTGTGTAGCTTGATTCTGCACAAGCTTGAAGGGTTTTAACTTTGAAGACCCACATTTAAACGGTTAAAAGTAAAGTACTCCATAAATCTATTTCTTAAATAAATAAAAAAAGAAGAAGCAATCGTTCCAAATA
>Glyma11g03320.1 sequence type=CDS gene model=Glyma11g03320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACGCTTAGCTTCGGCATCGCCACGACATGTCTGAGTGCTGCCGCTGATTATCGTAGAAGAAGCAACTGGAAATGGAGCAGACCCAGAATTGTGTGTGTTGGATGGGACCCGGAAGGCGTGCTTGGTCCACCCCAAACTGGGCACCTCGCCAGGTTCGAGTTTAAGAGGCGCCTCGAGAGAGACGCAGATGCCCGCGAAGCCTTCCAACGTCAAGTCCGTGAAGAGAAAGAACGCCGTCAATCCCTTCGACAATCTCGTCCTCTTCCCGATACTCCGCAAGACCTCATTGAATACTTCCTTGACACTGAAGCTCAGGAGATTGAGTTTGAGATTGCAAGAATGAGACCAAGATTGAATGAGGAATTCTTTGCGCAACTCAAATTCGAGTTAGGACAGCTTCGATTCGCTGTTAACAAAACACAGCTCATGGAGGACAGACAGATTGAGCTGGAGGCTCTAGAGAAAGCCATACTAGAAGGATTAGAAGCCTATGATAAGATGCAAGGTGAACTCGTAAAAGCCAGGGCAAGCCTAACCAAAATCTTGACATCAAAGGATGCCAAAGCAACTTTGCTGGAGATGGTTGAAAAGAATGAAATTAATAGATCTTTATTGGCACTTCTAGATGAAAACATAGCAAGTGCACAAAAGGGCAACCAGAAACAGGCTGCAGAATATATGGAGAAGCTCCGCGGGGCTGTTCTTCGGTACATTACAGTTTAG >Glyma11g03320.2 sequence type=CDS gene model=Glyma11g03320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACGCTTAGCTTCGGCATCGCCACGACATGTCTGAGTGCTGCCGCTGATTATCGTAGAAGAAGCAACTGGAAATGGAGCAGACCCAGAATTGTGTGTGTTGGATGGGACCCGGAAGGCGTGCTTGGTCCACCCCAAACTGGGCACCTCGCCAGGTTCGAGTTTAAGAGGCGCCTCGAGAGAGACGCAGATGCCCGCGAAGCCTTCCAACGTCAAGTCCGTGAAGAGAAAGAACGCCGTCAATCCCTTCGACAATCTCGTCCTCTTCCCGATACTCCGCAAGACCTCATTGAATACTTCCTTGACACTGAAGCTCAGGAGATTGAGTTTGAGATTGCAAGAATGAGACCAAGATTGAATGAGGAATTCTTTGCGCAACTCAAATTCGAGTTAGGACAGCTTCGATTCGCTGTTAACAAAACACAGCTCATGGAGGACAGACAGATTGAGCTGGAGGCTCTAGAGAAAGCCATACTAGAAGGATTAGAAGCCTATGATAAGATGCAAGGTGAACTCGTAAAAGCCAGGGCAAGCCTAACCAAAATCTTGACATCAAAGGATGCCAAAGCAACTTTGCTGGAGATGGTTGAAAAGAATGAAATTAATAGATCTTTATTGGCACTTCTAGATGAAAACATAGCAAGTGCACAAAAGGGCAACCAGGCTGCAGAATATATGGAGAAGCTCCGCGGGGCTGTTCTTCGGTACATTACAGTTTAG
>Glyma11g03320.1 sequence type=predicted peptide gene model=Glyma11g03320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATLSFGIATTCLSAAADYRRRSNWKWSRPRIVCVGWDPEGVLGPPQTGHLARFEFKRRLERDADAREAFQRQVREEKERRQSLRQSRPLPDTPQDLIEYFLDTEAQEIEFEIARMRPRLNEEFFAQLKFELGQLRFAVNKTQLMEDRQIELEALEKAILEGLEAYDKMQGELVKARASLTKILTSKDAKATLLEMVEKNEINRSLLALLDENIASAQKGNQKQAAEYMEKLRGAVLRYITV* >Glyma11g03320.2 sequence type=predicted peptide gene model=Glyma11g03320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATLSFGIATTCLSAAADYRRRSNWKWSRPRIVCVGWDPEGVLGPPQTGHLARFEFKRRLERDADAREAFQRQVREEKERRQSLRQSRPLPDTPQDLIEYFLDTEAQEIEFEIARMRPRLNEEFFAQLKFELGQLRFAVNKTQLMEDRQIELEALEKAILEGLEAYDKMQGELVKARASLTKILTSKDAKATLLEMVEKNEINRSLLALLDENIASAQKGNQAAEYMEKLRGAVLRYITV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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