SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G62790 | AT | Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:23252369-23253481 FORWARD LENGTH=150 | SoyBase | E_val: 5.00E-12 | ISS |
| GO:0006869 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid transport | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0008289 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipid binding | SoyBase | N/A | ISS |
| UniRef100_C6T4G3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4G3_SOYBN | SoyBase | E_val: 3.00E-98 | ISS |
| UniRef100_G7KG82 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipid binding protein n=1 Tax=Medicago truncatula RepID=G7KG82_MEDTR | SoyBase | E_val: 2.00E-36 | ISS |
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Glyma11g03310 not represented in the dataset |
Glyma11g03310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g030300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g03310.1 sequence type=CDS gene model=Glyma11g03310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATCGCACTAGCATGTCTATGCCGTTAATGGTGGTGTTAGGCATGACTCTAGTAATTTGCTTGGCAAATGGGCAAGCTACACCCCCTTGCGCTAAACACCTAAGTCCATGTCTTGATGTCATGAACTCCACTAAGCCACCCGACACATGCTGCAATCCAATCAAAGAAACCCAGAGTACATGTTTCTGCCAACTTGTATCAACTCCGGGTATGCTTGAAGGTATTGGTACCACTATCGCTCAGGCTCTCAAACTTGCCAACTTATGCGGTGTCAACTTCACACTCACCACCTGCAAAGCCTCTACTTCGGCTCCGCCTCCGTCCTTGGTGCAACCCCCGGCAACGTTAGGAGGTGATGAAGGAGGTGCAAGCAGAGCTGCATTTACCGGACTCTCCTTCGCACTGTTCTTATGTGCTTGTGTGTTGTTTAATTAG
>Glyma11g03310.1 sequence type=predicted peptide gene model=Glyma11g03310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYRTSMSMPLMVVLGMTLVICLANGQATPPCAKHLSPCLDVMNSTKPPDTCCNPIKETQSTCFCQLVSTPGMLEGIGTTIAQALKLANLCGVNFTLTTCKASTSAPPPSLVQPPATLGGDEGGASRAAFTGLSFALFLCACVLFN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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