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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G12130 | AT | Annotation by Michelle Graham. TAIR10: Glycine cleavage T-protein family | chr4:7263640-7265425 FORWARD LENGTH=393 | SoyBase | E_val: 2.00E-172 | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005759 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix | SoyBase | N/A | ISS |
| GO:0004047 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminomethyltransferase activity | SoyBase | N/A | ISS |
| KOG2929 | KOG | Transcription factor, component of CCR4 transcriptional complex | JGI | ISS | |
| PTHR22602 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF01571 | PFAM | Aminomethyltransferase folate-binding domain | JGI | ISS | |
| PF08669 | PFAM | Glycine cleavage T-protein C-terminal barrel domain | JGI | ISS | |
| UniRef100_B9RBS7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aminomethyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RBS7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LGL4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGL4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g03250 not represented in the dataset |
Glyma11g03250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g42120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g029800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g03250.2 sequence type=transcript gene model=Glyma11g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCATTTTAATAAATAAAATTCTCTTTTAATCCCTCGCTCAAGCTTCTCTGTGCCTCTTCCTTTCTCCCTGTCTTCATCTTGCATGGATTGTAAGTTCATTGTAGTTGGTTTGGTAAGATAAAGTGATTTCAGTATTTCATAGGGGAAAAAATAAAAATAAAAACATTAGCTGGCATAAGCGTACACCAAAAAAAATGTTGGTGTGGCGAAGTTGAGTAAGGGGACTAGCCAGGAGCGGACGAGTGGATTCTCTCGCACGCCTTTCATCGAACACCTATCCATCTTCAACAACGTGTCAATCCACCAAAAACCCACACGCCCTTCCAAGCCCAAGCCTACCGAACCTGGTTTGTGTTGTGCCGATTAGCTTCTTCTTCTTCTTCTTTTCCGAAATTCAGCAGTAGCTATGAATCGCGTTGCATTGCCCAAATCCATTGCCCAGCGTTTCAGAGGCATCCACCACAGCCCGTGTAAGCAGTTGTGTAATAACAACCGTTGCGAAGGCCAGGTCCAAAGTGCTGGGCCCGTGGGGTCTCTCCTCAAGTCCCGTTCGGTTATTCGGTTCCGCGGGCCTGACACACTCAAATTCCTTCAGGGCTTGTTGACCAACGATGTACGCAATTTCGGTGAAGCCGTTGGTGACAGAACTGAAAACTTGCCCACGCCCAACGTGCCTGCTACGTCGGTTCCTCCTATCTATGCTGCTCTATTGACCCCTCAAGGGAGATTCCTCTACGACCTCTTTCTCTATAAGCCTCCCACGTGCCACACCAAGCTCGATCACACCGGCACTGGCCCTGATTCCAAACCACACGAACCCTTTCATATGTTTGCTGACGTCGATGCTTCTGTGTTGGATGAATTGTTGCAAACCCTCAACAAATACCGATTGAGGTCAAAGGTTGAGATTGATGATGTCTCAAGTGATTTCTCTTGCTGGCAGCGTTATGGTGCTGGCCTTTCTGAGAAGTCCTCACAAGTAGAAGAACCAGAAGCAGCCTCTGTAGGCTGGGCTGCTGGTGTGGATCGTACTGCAATGTCATCCTCTCAAGGGAGTGATCAAGGGTGGCAATGGTTTAAGGATCCCAGATTGGTCTGTCTTGGTTTCAGAGGGATCTTCCCGTCGAACATAACTCCACCTCTAATTGAGGTTGACAAAGAGACTGATGAACAGAATTTCCTTCTGTGGAGAATAGAGAAGGGAGTAGCAGAAGGATCAACCGAGATTCCAAAAGGTGAGGCAGTACCGCTTGAGTATAATCTTGCAGGCCTTAATGCAATTAGCTTTGACAAAGGTTGCTATGTCGGCCAAGAACTCATAGCTCGTACACATCACAGGGGGGTGATTCGCAAACGGATAGTTCCTCTAAGGTTTCTAGATAACGATGGGAAAGCCATTCCTTTTCTGCTATTCCAGAGTTGGTAAACAAAGTCATTCCAGGCTCAGAAGTAATGAACACTGCATCTGGCAAAAAAGCTGGTACAGTGACTACCGCCCTAGGATGTCGTGGGCTGGGGCTCTTGCGAGTAGAGGAAGCTTTAAAGGGGTCGAGTGCCTTGTCCATTCAGGGACAAGAGGATGTGAAGGTTGTCGCTAGTAGACCAGATTGGTGGCCTTCTGAATGGCTTCAAGATCAAGGGCAACACGCTGCTTTTGCCTAGGATGCCCAATGTCGTTCAAAGGGCGAGTATTTATGATGAACAATTTTGTGGGTGCATGAATAATTTGATAACGTAGCGTTGATGTAATCCTAATGCTTCCAGTGGATGAATAGTTAGTTAAAAAGGGGAACAATGAAGACAGCACTAGTGGGTTTTCTTGCGGAATGAGTTTCATTGTAGTAATGGTAGTATGCCATTTTCCCCCCATAGAACCTTAACAATTTTGTGTTTGGCAAATTAGGAAGGAATCATGTTATGCGATATATCTTTGTACCTGTGCAAAACAATACTTTGCAGTTGTTTCAACCATGCATTTTTTTTGTTATGAAATTTTACACATTTTCTACGAGAAACAATTTTTAATAAAATGGACATGAATAAACA
>Glyma11g03250.1 sequence type=CDS gene model=Glyma11g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCGCGTTGCATTGCCCAAATCCATTGCCCAGCGTTTCAGAGGCATCCACCACAGCCCGTGTAAGCAGTTGTGTAATAACAACCGTTGCGAAGGCCAGGTCCAAAGTGCTGGGCCCGTGGGGTCTCTCCTCAAGTCCCGTTCGGTTATTCGGTTCCGCGGGCCTGACACACTCAAATTCCTTCAGGGCTTGTTGACCAACGATGTACGCAATTTCGGTGAAGCCGTTGGTGACAGAACTGAAAACTTGCCCACGCCCAACGTGCCTGCTACGTCGGTTCCTCCTATCTATGCTGCTCTATTGACCCCTCAAGGGAGATTCCTCTACGACCTCTTTCTCTATAAGCCTCCCACGTGCCACACCAAGCTCGATCACACCGGCACTGGCCCTGATTCCAAACCACACGAACCCTTTCATATGTTTGCTGACGTCGATGCTTCTGTGTTGGATGAATTGTTGCAAACCCTCAACAAATACCGATTGAGGTCAAAGGTTGAGATTGATGATGTCTCAAGTGATTTCTCTTGCTGGCAGCGTTATGGTGCTGGCCTTTCTGAGAAGTCCTCACAAGTAGAAGAACCAGAAGCAGCCTCTGTAGGCTGGGCTGCTGGTGTGGATCGTACTGCAATGTCATCCTCTCAAGGGAGTGATCAAGGGTGGCAATGGTTTAAGGATCCCAGATTGGTCTGTCTTGGTTTCAGAGGGATCTTCCCGTCGAACATAACTCCACCTCTAATTGAGGTTGACAAAGAGACTGATGAACAGAATTTCCTTCTGTGGAGAATAGAGAAGGGAGTAGCAGAAGGATCAACCGAGATTCCAAAAGGTGAGGCAGTACCGCTTGAGTATAATCTTGCAGGCCTTAATGCAATTAGCTTTGACAAAGGTTGCTATGTCGGCCAAGAACTCATAGCTCGTACACATCACAGGGGGGTGATTCGCAAACGGATAGTTCCTCTAAGGTTTCTAGATAACGATGGGAAAGAGTTGGTAAACAAAGTCATTCCAGGCTCAGAAGTAATGAACACTGCATCTGGCAAAAAAGCTGGTACAGTGACTACCGCCCTAGGATGTCGTGGGCTGGGGCTCTTGCGAGTAGAGGAAGCTTTAAAGGGGTCGAGTGCCTTGTCCATTCAGGGACAAGAGGATGTGAAGGTTGTCGCTAGTAGACCAGATTGGTGGCCTTCTGAATGGCTTCAAGATCAAGGGCAACACGCTGCTTTTGCCTAG >Glyma11g03250.2 sequence type=CDS gene model=Glyma11g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCGCGTTGCATTGCCCAAATCCATTGCCCAGCGTTTCAGAGGCATCCACCACAGCCCGTGTAAGCAGTTGTGTAATAACAACCGTTGCGAAGGCCAGGTCCAAAGTGCTGGGCCCGTGGGGTCTCTCCTCAAGTCCCGTTCGGTTATTCGGTTCCGCGGGCCTGACACACTCAAATTCCTTCAGGGCTTGTTGACCAACGATGTACGCAATTTCGGTGAAGCCGTTGGTGACAGAACTGAAAACTTGCCCACGCCCAACGTGCCTGCTACGTCGGTTCCTCCTATCTATGCTGCTCTATTGACCCCTCAAGGGAGATTCCTCTACGACCTCTTTCTCTATAAGCCTCCCACGTGCCACACCAAGCTCGATCACACCGGCACTGGCCCTGATTCCAAACCACACGAACCCTTTCATATGTTTGCTGACGTCGATGCTTCTGTGTTGGATGAATTGTTGCAAACCCTCAACAAATACCGATTGAGGTCAAAGGTTGAGATTGATGATGTCTCAAGTGATTTCTCTTGCTGGCAGCGTTATGGTGCTGGCCTTTCTGAGAAGTCCTCACAAGTAGAAGAACCAGAAGCAGCCTCTGTAGGCTGGGCTGCTGGTGTGGATCGTACTGCAATGTCATCCTCTCAAGGGAGTGATCAAGGGTGGCAATGGTTTAAGGATCCCAGATTGGTCTGTCTTGGTTTCAGAGGGATCTTCCCGTCGAACATAACTCCACCTCTAATTGAGGTTGACAAAGAGACTGATGAACAGAATTTCCTTCTGTGGAGAATAGAGAAGGGAGTAGCAGAAGGATCAACCGAGATTCCAAAAGGTGAGGCAGTACCGCTTGAGTATAATCTTGCAGGCCTTAATGCAATTAGCTTTGACAAAGGTTGCTATGTCGGCCAAGAACTCATAGCTCGTACACATCACAGGGGGGTGATTCGCAAACGGATAGTTCCTCTAAGGTTTCTAGATAACGATGGGAAAGCCATTCCTTTTCTGCTATTCCAGAGTTGGTAA
>Glyma11g03250.1 sequence type=predicted peptide gene model=Glyma11g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNRVALPKSIAQRFRGIHHSPCKQLCNNNRCEGQVQSAGPVGSLLKSRSVIRFRGPDTLKFLQGLLTNDVRNFGEAVGDRTENLPTPNVPATSVPPIYAALLTPQGRFLYDLFLYKPPTCHTKLDHTGTGPDSKPHEPFHMFADVDASVLDELLQTLNKYRLRSKVEIDDVSSDFSCWQRYGAGLSEKSSQVEEPEAASVGWAAGVDRTAMSSSQGSDQGWQWFKDPRLVCLGFRGIFPSNITPPLIEVDKETDEQNFLLWRIEKGVAEGSTEIPKGEAVPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRIVPLRFLDNDGKELVNKVIPGSEVMNTASGKKAGTVTTALGCRGLGLLRVEEALKGSSALSIQGQEDVKVVASRPDWWPSEWLQDQGQHAAFA* >Glyma11g03250.2 sequence type=predicted peptide gene model=Glyma11g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNRVALPKSIAQRFRGIHHSPCKQLCNNNRCEGQVQSAGPVGSLLKSRSVIRFRGPDTLKFLQGLLTNDVRNFGEAVGDRTENLPTPNVPATSVPPIYAALLTPQGRFLYDLFLYKPPTCHTKLDHTGTGPDSKPHEPFHMFADVDASVLDELLQTLNKYRLRSKVEIDDVSSDFSCWQRYGAGLSEKSSQVEEPEAASVGWAAGVDRTAMSSSQGSDQGWQWFKDPRLVCLGFRGIFPSNITPPLIEVDKETDEQNFLLWRIEKGVAEGSTEIPKGEAVPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRIVPLRFLDNDGKAIPFLLFQSW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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