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Report for Sequence Feature Glyma11g03230

Feature Type:gene_model
Chromosome:Gm11
Start:2129780
stop:2141150
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g03230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12360AT Annotation by Michelle Graham. TAIR10: Sec1/munc18-like (SM) proteins superfamily | chr1:4201172-4206144 FORWARD LENGTH=666 SoyBaseE_val: 0ISS
GO:0000910GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006904GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis SoyBaseN/AISS
GO:0009306GO-bp Annotation by Michelle Graham. GO Biological Process: protein secretion SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0019898GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
KOG1300 KOG Vesicle trafficking protein Sec1 JGI ISS
PTHR11679Panther VESICLE PROTEIN SORTING-ASSOCIATED JGI ISS
PTHR11679:SF5Panther gb def: vacuolar sorting protein essential for vacuolar morphogenesis and function, vps3 JGI ISS
PF00995PFAM Sec1 family JGI ISS
UniRef100_G7JLB0UniRef Annotation by Michelle Graham. Most informative UniRef hit: SNARE-interacting protein KEULE n=1 Tax=Medicago truncatula RepID=G7JLB0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LGL2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGL2_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma11g03230
LocusGene SymbolProtein Name
KEU protein transporter

Expression Patterns of Glyma11g03230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g03230 not represented in the dataset
Glyma11g03230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g03230
ParalogEvidenceComments
Glyma01g42140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g03230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g029600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g03230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g03230
>Glyma11g03230.1   sequence type=CDS   gene model=Glyma11g03230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTATGTCCGATTCCGATTCCTCTTCTTACGCCGGCGCCGACTACAAAAGTTTCAAGCAAATTAGCCGCGAGCGATTATTACATGAAATGCTGAGGTCATCAAAAACAGGGGATTCCAAATCAACTTGGAAGGTATTAATAATGGATAAACTTACTGTGAAGATAATGTCTCACTCATGCAAGATGACTGATATCACTGATGAAGGTGTTTCATTGGTTGAAGACATATACAAGAGAAGGCAGCCATTGCCCACCATGGATGCTATATATTTCATCCAGCCAACCAGAGAAAATGTAATTATGTTTTTGTCAGACATGTCTGGAAGGACACCCTTATACAGGAAGGCATTTGTTTTCTTCAGTTCAGCTATTTCCAAAGAATTAGTTATGGACATTAAGAAAGATACGAAGGTGTTGACTCGATTAGGTGCATTGAGAGAGATGAATTTGGAGTATTTTCCCATAGACAGCCAGGGTTTCATCACAAATAATGAGAGGGCATTAGAGGAGCTATTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAGAATTTCCTTCTGTTCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACAATGACTACTTTCCGTGATCTTATTCCTACAAAGCTTGCTGCTGGAGTCTGGGACTGTCTTATGAAATATAAAAAAAGTATACCTAATTTTCCTCAGACAGAGACCTGTGAATTGCTCATTGTTGACAGATCTATTGATCAGATTGCTCCTGTGATACATGAATGGACTTATGATGCCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCATGAAGTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAAGCTGCACAAATACAACATGGTTCAAAAAGTAGCAGTGAAATGTCAACAAGGGACATACAAAAGATGGTTCAAGCACTTCCACAGTACAGTGAACAAATTGACAAGCTCTCCCTCCATGTAGAGATTGCAGGAAAAATTAATAGAATCATTAGGGAGTCAGGACTACGGGAACTTGGCCAGCTGGAGCAAGATCTTGTTTTTGGAGATGCAACTACAAAAGATGTGATCAAATTTTTTACCATGACAGAAGATATAGCCCATGAAAATAAGTTGCGCCTGTTAATGATTCTTGCATCTGTTTGTCCTGAGAAATTTGAGGGAGAAAAGGGTCAGAATTTGATGAGGCTAGCAAAATTGACAGAAGAGGATATGAACGTTGTTCACAATATGAGAATGCTTGGAGGACAACCAGTTACCAAAAAAAAATTGACCACTGCTTTTGGTCTTAAGTTTGATATCCATAAGAAGAAGCGTGCTGCAAGGAAAGATCGTCCTGGGGAAGAAGAGAAATGGCAGCTATCACGCTTTTATCCCATAATAGAGGAACTCCTTGAAAAACTCACGAAAAATGAATTGTCAAAGGAAGATTATCCATGTTTGAATGATCCAAGTCCATCTTACCATGGCTCACCTTTTTCTGGACCTGTAAACCAAAATCCTCACTCAATGAGATCAAGACGAACACCAACTTGGGCTCGACCACGAGGTTCTGAAGATGGATATTCAAGCGATTCAGTGCTTAGACATGCATCGAGTGATTTCAGGAGGATGGGGCAACGAATTTTTGTATTCATTGTTGGTGGAGCAACCAGATCTGAGCTTAGGGTTTGCCATAAGCTTACCGAAAAGCTAAAGAGGGAAATTATTCTCGGCTCATCAAGTCTTGATGACCCAGCACAATTTATTACGAAATTAAAGATGATAACGACGCATGAGCTTTCATTAGATGATATCCAGATATGA
Predicted protein sequences of Glyma11g03230
>Glyma11g03230.1   sequence type=predicted peptide   gene model=Glyma11g03230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMSDSDSSSYAGADYKSFKQISRERLLHEMLRSSKTGDSKSTWKVLIMDKLTVKIMSHSCKMTDITDEGVSLVEDIYKRRQPLPTMDAIYFIQPTRENVIMFLSDMSGRTPLYRKAFVFFSSAISKELVMDIKKDTKVLTRLGALREMNLEYFPIDSQGFITNNERALEELFGDEENNHKGVTCLNVMAKRIATVFASLREFPSVRFRAAKSLDATTMTTFRDLIPTKLAAGVWDCLMKYKKSIPNFPQTETCELLIVDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHEVPGKSGGPAERKEVLLEDHDPIWLELRHAHIAYASEQLHEKMTNFISKNKAAQIQHGSKSSSEMSTRDIQKMVQALPQYSEQIDKLSLHVEIAGKINRIIRESGLRELGQLEQDLVFGDATTKDVIKFFTMTEDIAHENKLRLLMILASVCPEKFEGEKGQNLMRLAKLTEEDMNVVHNMRMLGGQPVTKKKLTTAFGLKFDIHKKKRAARKDRPGEEEKWQLSRFYPIIEELLEKLTKNELSKEDYPCLNDPSPSYHGSPFSGPVNQNPHSMRSRRTPTWARPRGSEDGYSSDSVLRHASSDFRRMGQRIFVFIVGGATRSELRVCHKLTEKLKREIILGSSSLDDPAQFITKLKMITTHELSLDDIQI*






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