Glyma11g03220 - SoyBase

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Report for Sequence Feature Glyma11g03220

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2125284
stop:	2129241
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g03220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12370	AT	Annotation by Michelle Graham. TAIR10: photolyase 1 \| chr1:4206500-4208842 REVERSE LENGTH=496	SoyBase	E_val: 0	ISS
GO:0000719	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoreactive repair	SoyBase	N/A	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0009650	GO-bp	Annotation by Michelle Graham. GO Biological Process: UV protection	SoyBase	N/A	ISS
GO:0003904	GO-mf	Annotation by Michelle Graham. GO Molecular Function: deoxyribodipyrimidine photo-lyase activity	SoyBase	N/A	ISS
GO:0003913	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA photolyase activity	SoyBase	N/A	ISS
KOG0133	KOG	Deoxyribodipyrimidine photolyase/cryptochrome	JGI		ISS
PTHR10211	Panther	DNA PHOTOLYASE	JGI		ISS
PF00875	PFAM	DNA photolyase	JGI		ISS
PF03441	PFAM	FAD binding domain of DNA photolyase	JGI		ISS
UniRef100_B1B538	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CPD photolyase n=1 Tax=Glycine max RepID=B1B538_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LGL1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGL1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g03220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g03220

Paralog	Evidence	Comments
Glyma01g42150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g03220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g029500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g03220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g03220

Limit To All Plant Sequences

>Glyma11g03220.1   sequence type=CDS   gene model=Glyma11g03220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCACAGCGTCGCCGATGACGGTTCAGGCGGGTCGGGTTCGGACCCTGAAAGAAGGTTCTCGCGGAGAATCGGGTTTGGGTCCGGTCGTGTACTGGATGTTCAGAGACCAACGTGTGACAGACAATTGGGCTCTGATCCACGCTGTTGCTGAGGCCAACAAAGCCAACGTTCCCGTTGCCGTTGTTTTCAATCTCTTCCACACCTTTCTTGGCGCCAAATCCCGTCATTTAGGGTTCATGCTCAGGGGCTTGCGCCAATTGTGCCACCGTATGCAACACTCTCTTCAAATCCCCTTTTTCTTGTTCCAGGGAGAGGCAGAGGAGACAGTGCCAAAGTTTCTTAGAGAATGTGGAGCTTCACTTTTGGTGACGGATTTCTCACCTTTGCGGGAAGTACGGAGGTGTAAAGAAGAGATATGCAAGAGGGTAAGCGATTCGGTTGCTGTGCATGAAGTGGATGCTCACAACGTTGTGCCCCTTTGGGTTGCCTCTGATAAATTGGAGTACAGTGCTAGGACCATCAGGGCGAAGATAACCAAAAGGCTTTCTGACTATCTCGTTGATTTCCCTGACATTGAAGTTGAGCCACCAGCTGGGAAGTGGGTGGCTACTGAGAACCATTCCATTGACTGGGATGATCTCATTGCTGATGTGTTAAGGAGAGGAGCAGAGGTTCCTGAAGTTGATTGGTGTGAGCCAGGGGAAATTGCCGCAAGTGAAGTATTAATGGGAAGTAAAAATGGATTCTTGACTAAAAGGTTGAAAGGTTATTCCCTGGACCGCAACAACCCGTGCCACCCCAATGCGCTTTCTGGCTTATCTCCCTATTTGCACTTTGGACAGATATCTGCTCAGCGATGTGCTTTAGAAGCACGTAAGCGGCGAAATTCACATCCTCAAGCAATTGATGCTTTCTTGGAGGAGTTGATTGTGCGGAGAGAGCTTGCTGATAACTATTGCTTCTACCAGCCTCATTATGATTCATTAAAAGGAGCATGGGCATGGGCTCAGAACACCTTAACTGAACATGCCACTGATAAGCGAGAACATATTTACACGAAGGAGCAGTTGGAGAAGGCACAGACAGCTGATCCTCTCTGGAATGCTTCTCAGCTGGAGATGGTTCACTATGGGAAAATGCATGGTTTTATGAGAATGTATTGGGCAAAGAAGATACTTGAGTGGACACGAGGACCTGAAGAAGCCCTTGAGATATCTTTGTATTTAAATGACAAGTATGAATTAGATGGGAGAGATCCAAATGGTTATGTTGGCTGCATGTGGTCAATATGTGGGGTTCATGATCAGGGTTGGAAAGAGCGGCCCATTTTTGGGAAAATTCGATACATGAACTATGCAGGCTGCAAAAGAAAATTTGATGTCGATAAATACATTGCATATGTCAATAAATTAGTTCGTGAGCTCAAAAAGAGGAAGGCTGAAAACTTGCTATCTCAAAAGGAGAAAGTAGTTCGCAGTTGTGATCCTGAAGATTGA

Predicted protein sequences of Glyma11g03220

Limit To All Plant Sequences

>Glyma11g03220.1   sequence type=predicted peptide   gene model=Glyma11g03220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTASPMTVQAGRVRTLKEGSRGESGLGPVVYWMFRDQRVTDNWALIHAVAEANKANVPVAVVFNLFHTFLGAKSRHLGFMLRGLRQLCHRMQHSLQIPFFLFQGEAEETVPKFLRECGASLLVTDFSPLREVRRCKEEICKRVSDSVAVHEVDAHNVVPLWVASDKLEYSARTIRAKITKRLSDYLVDFPDIEVEPPAGKWVATENHSIDWDDLIADVLRRGAEVPEVDWCEPGEIAASEVLMGSKNGFLTKRLKGYSLDRNNPCHPNALSGLSPYLHFGQISAQRCALEARKRRNSHPQAIDAFLEELIVRRELADNYCFYQPHYDSLKGAWAWAQNTLTEHATDKREHIYTKEQLEKAQTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPNGYVGCMWSICGVHDQGWKERPIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVRELKKRKAENLLSQKEKVVRSCDPED*

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