Glyma11g03130 - SoyBase

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Report for Sequence Feature Glyma11g03130

Feature Type:	gene_model
Chromosome:	Gm11
Start:	2065378
stop:	2068313
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g03130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22810	AT	Annotation by Michelle Graham. TAIR10: Predicted AT-hook DNA-binding family protein \| chr4:11984432-11985406 FORWARD LENGTH=324	SoyBase	E_val: 8.00E-82	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_B9RBV3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ESC, putative n=1 Tax=Ricinus communis RepID=B9RBV3_RICCO	SoyBase	E_val: 5.00E-115	ISS
UniRef100_I1LGK4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGK4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g03130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g03130

Paralog	Evidence	Comments
Glyma01g42230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g03130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g028800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g03130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g03130

Limit To All Plant Sequences

>Glyma11g03130.2   sequence type=transcript   gene model=Glyma11g03130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCACCGCCCATAAGTTCGCAGTCTTGGGGAAACCTTGGATTTATTTTCTCAATCTAACCCTAACCTATCACACAACATCTGATTCTACTTTGTTTTTTCCTCGGTCACCATTCTTGCAGTTCCTGAAGAGGAACTTGAATTTTATCACCCTCCAATTCACCTCCCTCGCGAATTTCAATCTCATATCTTGTCTTCCTTCCTTTCATCACTACTACTCAACTTAATATATAGGAAGCTAGCTGTTAGTCCTCTACTGCTTGCATCACTTCAAATTAGCAACAAACTTAAGCCCATCAAAATTATTGCAATTACACATATATAAAGATATATATTGGAATTCTCCAATTGAATTCACTTCCTTTAGTTCTTGTATATTACTCATAGACAAAAAAAAAGAAGAAATGGATCCTATTACAGCACATGGTCACTCTCTTCCACCTCCTTTCCACACAGCAAGAGATCTCCACCTCCACCACCAACAGCAACAACACCAGTTCCACTCCTTACAAGAAGACGAGCAAAGTGGAAGCAGCGGAGGCCTAAACCTCGCAGCTCACAAAAGGGAACGCGAAGAAAACAACAACAGCGATGGCAAAGAAGGTGGTGCTGGCTCCGCCGAAACCGAAATTTCAAGAAGACCTCGAGGAAGACCCGCCGGATCCAAGAACAAGCCCAAGCCCCCCATCATCATCACGCGTGACAGCGCCAACGCCCTCAAAACGCACGTCATGGAAGTCGCCGACGGCTGCGACATCGTCGAGAGCGTCTCCGCCTTCGCCCGCCGCCGCCAGAGAGGGGTTTGCATCATGAGCGGCACTGGAACCGTCACCAACGTCACCCTGAGGCAACCTGCTTCTTCCGGCGCCGTCGTCACTCTCCACGGCAGGTTCGAGATCTTGTCCCTCGCCGGATCCTTCCTCCCACCTCCGGCGCCTCCCGAAGCCTCCGGTTTGACCATATACCTAGCCGGAGGACAAGGACAAGTCGTCGGAGGAAGCGTGGTTGGCGCGCTGATTGCTTCGGGGCCTGTGGTTATCATGTCAGCTTCGTTTAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAGGAGCCGTCGATTGGGCTTCAGGGAGGAGGTTCGATTGGGTCACCTGGCGGTGGCGGTGGCGTTGGTCAATCGCAGGCACCTCATCAGCTTATGGGGGATTCTACTACAGCGCCTCTTTTCCATGGTTTGAATCCGAATCTTCTGAATTCGGTTCAGATGCCGTCGACGGAGACGTTCTGGGCAACGGGTCGCTCTCCTTACTGCTGATCGATGATGCAACAGTAACAATACTGTGACTGTGGATCATTTCATTGGTGTAAGTGAAACGCTATCTATCCATCAATCGCTGTTGCCTGGTTAATTTCCTTGATTAATGCCTCTTGTTTTTAGCTTTTTGGGGGTGGATCGGGTACGTACGTACTACGTAGCAAGAGATTCACCAAACTGTACTGTCGTGTTGCGAAAAAGCTAGTTAGTAGGGAATGAATAGTGGATCCATATTAAGTTGAACGAACCAACGTGCCATTCAGCTTCTATTGTTTGTCGTTTTGATTATTAGTACTAGTTATTTACTGGGTAGCAGCAGCAGTAATAGTTTGTACGCGGAACGAATGCAAAGGAGAATGAGGAGGAAGATTTAAGAGAACCACGCAGTGGGGGAAGATATTCTCTACTGCATGTTGTGTCTTCGATTCAACACTTAATGTAAGTGTTTGAAAACTTACATTTGCAGGTTGGTATTCGTTGCATTCCTTGTTCTCGTTGTTTTCTGTTCGTTGTTATATGGGCGTCTTCTATCAGGTTTAGAAACCGAAGAACAGCGTTTTGGGTTGCTCATATTTCTGAATTGAAAGAGTACATCGTTCTCATACATAGTAGGAGTAGTAGAAGGAGAAGATAAACATGAAAGTTTGGCAACTGGTTCACACATGCAATGTCTGATCAGAGCTCTTTTTCGAGGCATTAATTCACCTACACTTTCATTAAAAAGGCAACGATAACCAAGACAACCAACAGGGTTCCCGAACGTAGTATATAGCCTGTCTCCC

Coding sequences of Glyma11g03130

Limit To All Plant Sequences

>Glyma11g03130.1   sequence type=CDS   gene model=Glyma11g03130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTATTACAGCACATGGTCACTCTCTTCCACCTCCTTTCCACACAGCAAGAGATCTCCACCTCCACCACCAACAGCAACAACACCAGTTCCACTCCTTACAAGAAGACGAGCAAAGTGGAAGCAGCGGAGGCCTAAACCTCGCAGCTCACAAAAGGGAACGCGAAGAAAACAACAACAGCGATGGCAAAGAAGGTGGTGCTGGCTCCGCCGAAACCGAAATTTCAAGAAGACCTCGAGGAAGACCCGCCGGATCCAAGAACAAGCCCAAGCCCCCCATCATCATCACGCGTGACAGCGCCAACGCCCTCAAAACGCACGTCATGGAAGTCGCCGACGGCTGCGACATCGTCGAGAGCGTCTCCGCCTTCGCCCGCCGCCGCCAGAGAGGGGTTTGCATCATGAGCGGCACTGGAACCGTCACCAACGTCACCCTGAGGCAACCTGCTTCTTCCGGCGCCGTCGTCACTCTCCACGGCAGGTTCGAGATCTTGTCCCTCGCCGGATCCTTCCTCCCACCTCCGGCGCCTCCCGAAGCCTCCGGTTTGACCATATACCTAGCCGGAGGACAAGGACAAGTCGTCGGAGGAAGCGTGGTTGGCGCGCTGATTGCTTCGGGGCCTGTGGTTATCATGTCAGCTTCGTTTAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAGGAGCCGTCGATTGGGCTTCAGGGAGGAGGTTCGATTGGGTCACCTGGCGGTGGCGGTGGCGTTGGTCAATCGCAGGCACCTCATCAGCTTATGGGGGATTCTACTACAGCGCCTCTTTTCCATGGTTTGAATCCGAATCTTCTGAATTCGGTTCAGATGCCGTCGACGGAGACGTTCTGGGCAACGGGTCGCTCTCCTTACTGCTGA

>Glyma11g03130.2   sequence type=CDS   gene model=Glyma11g03130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTATTACAGCACATGGTCACTCTCTTCCACCTCCTTTCCACACAGCAAGAGATCTCCACCTCCACCACCAACAGCAACAACACCAGTTCCACTCCTTACAAGAAGACGAGCAAAGTGGAAGCAGCGGAGGCCTAAACCTCGCAGCTCACAAAAGGGAACGCGAAGAAAACAACAACAGCGATGGCAAAGAAGGTGGTGCTGGCTCCGCCGAAACCGAAATTTCAAGAAGACCTCGAGGAAGACCCGCCGGATCCAAGAACAAGCCCAAGCCCCCCATCATCATCACGCGTGACAGCGCCAACGCCCTCAAAACGCACGTCATGGAAGTCGCCGACGGCTGCGACATCGTCGAGAGCGTCTCCGCCTTCGCCCGCCGCCGCCAGAGAGGGGTTTGCATCATGAGCGGCACTGGAACCGTCACCAACGTCACCCTGAGGCAACCTGCTTCTTCCGGCGCCGTCGTCACTCTCCACGGCAGGTTCGAGATCTTGTCCCTCGCCGGATCCTTCCTCCCACCTCCGGCGCCTCCCGAAGCCTCCGGTTTGACCATATACCTAGCCGGAGGACAAGGACAAGTCGTCGGAGGAAGCGTGGTTGGCGCGCTGATTGCTTCGGGGCCTGTGGTTATCATGTCAGCTTCGTTTAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAGGAGCCGTCGATTGGGCTTCAGGGAGGAGGTTCGATTGGGTCACCTGGCGGTGGCGGTGGCGTTGGTCAATCGCAGGCACCTCATCAGCTTATGGGGGATTCTACTACAGCGCCTCTTTTCCATGGTTTGAATCCGAATCTTCTGAATTCGGTTCAGATGCCGTCGACGGAGACGTTCTGGGCAACGGGTCGCTCTCCTTACTGCTGA

Predicted protein sequences of Glyma11g03130

Limit To All Plant Sequences

>Glyma11g03130.1   sequence type=predicted peptide   gene model=Glyma11g03130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPITAHGHSLPPPFHTARDLHLHHQQQQHQFHSLQEDEQSGSSGGLNLAAHKREREENNNSDGKEGGAGSAETEISRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSAFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPEASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEEPSIGLQGGGSIGSPGGGGGVGQSQAPHQLMGDSTTAPLFHGLNPNLLNSVQMPSTETFWATGRSPYC*

>Glyma11g03130.2   sequence type=predicted peptide   gene model=Glyma11g03130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPITAHGHSLPPPFHTARDLHLHHQQQQHQFHSLQEDEQSGSSGGLNLAAHKREREENNNSDGKEGGAGSAETEISRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSAFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPEASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEEPSIGLQGGGSIGSPGGGGGVGQSQAPHQLMGDSTTAPLFHGLNPNLLNSVQMPSTETFWATGRSPYC*

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