SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G22860 | AT | Annotation by Michelle Graham. TAIR10: Cell cycle regulated microtubule associated protein | chr4:11997735-12001281 FORWARD LENGTH=509 | SoyBase | E_val: 2.00E-132 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0042127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR14326 | Panther | TARGETING PROTEIN FOR XKLP2 | JGI | ISS | |
| PTHR14326:SF11 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF12214 | PFAM | Cell cycle regulated microtubule associated protein | JGI | ISS | |
| UniRef100_A8MS21 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell cycle regulated microtubule associated protein n=1 Tax=Arabidopsis thaliana RepID=A8MS21_ARATH | SoyBase | E_val: 2.00E-100 | ISS |
| UniRef100_UPI000233C9CC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C9CC related cluster n=1 Tax=unknown RepID=UPI000233C9CC | SoyBase | E_val: 0 | ISS |
|
Glyma11g03060 not represented in the dataset |
Glyma11g03060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g42300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g028100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g03060.2 sequence type=CDS gene model=Glyma11g03060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATGATGGAAGAGGAAGATATGGAAGTAGAGGCACAAGTGTTCGTTGCTCACGAGATTGATTTGGATTACGAGTTCGACGCAGTTCGATTCTTCGATTTCGGTGCACAAGAAACTCCCGCTCAGGCTCGCCAAGCCGAACTCTGGTTTCATTCCGCCGGAAGCTATCCTCCTTCTCCTTTTGTGGCGAAGTTAGTGGCGAGAGAGGACGACGTTAGCGAATGTGCAACCACCGTTCACGCTGCCAAGTCTAATGTTCCGTCCGGGATTGGATTTTCTCGCACAGTTTTTCACCATGACGGTTCAAAAGGAGGGGGTGGGAGTGGGAACATTTCTGCCTTGCTGAGTGGAATTCCGTACGATCTTAATTTGCAACTTTTACAAGTAACCTCAGGAATGACCTTTAGCAGTAAGACAATTGGTAGCAATTTGAATTCTAAGGTTAAATCTGCTGTGATGAAGGGTTCAACACTAATGAGACCTACTGCTAGTCTGTTGGCTAAGCAAAATCGGCCCCATCAAATTGTTAGCTCAAGGTTTCAGAAAGTACAAGATCATAACAAAAAAATGAATTCATCTACCTCTTCTGGGATAGAGTGTCAAGCTGCCAAACGGCAGAAATTAGAAGGTGGCAGCTTGCACAAGGTTGCTGATGTGAAGCAGCAAGTTAATTTTGTCCACAAGGCACCTAAAAAGGTTGCAACTGTTGATCAAAATTCTGGACATTCCAAGCTGAAGATTACTATTCCTAGAGAGCCTGACCTAGAAACAGCTCACAGAGCACAAAGGATTAGACCTAAACCTGCTGCAGAGGCAGAAGTTGTGACAGTGGCTGTCCCCAGATTCAAAGCACGCCCGTTAAACAGAAAAATTCTAAATGCTCCTTCGTTTCCACTTCCCAAGAGGAGCACTCCACGATTGCCAGAATTTCTAGAATTTCATCTCAGGACACAAGAGAGGGCCATGCAGCATACATCTGCGACTTCATCGTCTTCACTTCATTGCAATGATTTTGATAAGGATTTGGACAAACATACAGCTGTTTCTGCTCAAGAAAATAGAATCAGGGATTTGAGAAGGCCATCTGCCCTGGGTGCTCCAAAGCATGATGGATTGGATTTTGCTCATTGTTTTAAAGCTCGTCCTCTTAATAAGAAGATTCTTTCAAGTAAAGGAGATATTGCTGTTTTCCTGAACAGAAAGCAGGAAACCACGGTGCCAATGGAATTTAATTTCCATACGGAAAAGAGGGTTCAGCATAACCCACCAAGCGAACTCTTTAGCAAGATGTCCCTAACATCCGAAGTCCAGTCAAATAATGGATCTCAGTTGAAACTGCCTCGGCATTCCAGAGTGTTCAGAGAGGATTCAAAAGAAAATATAGGAAGTTCTTTTCATCTGGATGTGAAGGAAACACCTTTCGTATTTGGGGGAAGGCAAATTCACAGTGGGAGGGAAGGTTGCGACGGTGACGCTGGTACTATGTTGACAGCAAGGAGGAGCTTGGGAATTCGATGA
>Glyma11g03060.2 sequence type=predicted peptide gene model=Glyma11g03060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMMMEEEDMEVEAQVFVAHEIDLDYEFDAVRFFDFGAQETPAQARQAELWFHSAGSYPPSPFVAKLVAREDDVSECATTVHAAKSNVPSGIGFSRTVFHHDGSKGGGGSGNISALLSGIPYDLNLQLLQVTSGMTFSSKTIGSNLNSKVKSAVMKGSTLMRPTASLLAKQNRPHQIVSSRFQKVQDHNKKMNSSTSSGIECQAAKRQKLEGGSLHKVADVKQQVNFVHKAPKKVATVDQNSGHSKLKITIPREPDLETAHRAQRIRPKPAAEAEVVTVAVPRFKARPLNRKILNAPSFPLPKRSTPRLPEFLEFHLRTQERAMQHTSATSSSSLHCNDFDKDLDKHTAVSAQENRIRDLRRPSALGAPKHDGLDFAHCFKARPLNKKILSSKGDIAVFLNRKQETTVPMEFNFHTEKRVQHNPPSELFSKMSLTSEVQSNNGSQLKLPRHSRVFREDSKENIGSSFHLDVKETPFVFGGRQIHSGREGCDGDAGTMLTARRSLGIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
