SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48150 | AT | Annotation by Michelle Graham. TAIR10: anaphase-promoting complex subunit 8 | chr3:17779800-17782565 REVERSE LENGTH=579 | SoyBase | E_val: 0 | ISS |
| GO:0007049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle | SoyBase | N/A | ISS |
| GO:0007276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gamete generation | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0030071 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic metaphase/anaphase transition | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0032875 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0042991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus | SoyBase | N/A | ISS |
| GO:0051302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell division | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1155 | KOG | Anaphase-promoting complex (APC), Cdc23 subunit | JGI | ISS | |
| PTHR12558 | Panther | ANAPHASE PROMOTING COMPLEX SUBUNIT | JGI | ISS | |
| PTHR12558:SF10 | Panther | CELL DIVISION CYCLE 23 | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| PF04049 | PFAM | Anaphase promoting complex subunit 8 / Cdc23 | JGI | ISS | |
| UniRef100_B9R8Z3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle, putative n=1 Tax=Ricinus communis RepID=B9R8Z3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LGI1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGI1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g02890 not represented in the dataset |
Glyma11g02890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g42530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g026400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g02890.1 sequence type=CDS gene model=Glyma11g02890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCCAAAGAGAGTTGCAGAAGTGAACTTCGCATTGCGATCCGCCAACTCAGTGATCGATGTCTCTACTCTGCTTCTAAATGGGCTGCAGAACAGTTGGTGGGTATTGAGCAAGACCCTGCCAAGTTCACTCCCTCGAACACGAGATTTCAGCGTGGGAGTTCGAGCATTCGCAGGAAGTACAAGACTCACGAGATCACGGGAACCCCAATCGCGGGTGTTTCGTATGTTGCCACGCCTGCGATGGAGGAAGATGAGCTTGTAGATGGTGATTTCTACCTTCTGGCAAAGTCCTATTTTGATTGCCGTGAGTATAAGAGAGCTGCTCATGTTCTTCGTGATCAGAACGGAAGGAAATCGGTGTTCCTGCGCTGCCATGCTCTCTATCTGGCTGGTGAAAAGCGGAAAGAGGAAGAGATGATAGAACTTGAGGGGCCTCTGGGTAAGAGTGACGCTGTCAATCATGAATTGGTTTCTTTGGAGAGAGAGTTGTCAACTTTTCGCAAGAATGGCAAAGTTGATCCTTTTTGTTTGTACTTATATGGTCTTGTGCTCAAACAGAAAGGCAGTGAGAATCTTGCACGTGCAGTTCTTGTAGAATCTGTGAATAGCTACCCTTGGAACTGGAATGCCTGGACTGAGTTGCAATCCTTATGCAAAACAGTGGATATATTGAATAGTCTTAATCTCAATAGCCATTGGATGAAGGACTTTTTCCTTGCCAGTGTTTACCAAGAATTAAGGATGCACAATGACTCTCTGTCAAAATATGAATACCTACTAGGAACCTTTAGTAATAGTAATTATGTACAAGCACAAATTGCAAAAGCCCAGTACAGTTTGAGGGAATTTGACCAAGTTGAAGCAATATTTGAAGAACTGCTGAGTAATGATCCTTACAGAGTGGAAGACATGGACATGTACTCCAATGTGCTTTATGCTAAGGAATGCTTTTCTGCTTTGAGTTATCTTGCCCATAGAGTATTCATGACTGATAAATACAGACCTGAATCTTGTTGTATTATTGGGAATTACTATAGTTTAAAGGGACAGCATGAGAAGTCAGTTGTGTATTTTAGGAGAGCCCTTAAATTGAACAAAAACTTTTTATCGGCTTGGACACTTATGGGGCATGAGTTTGTAGAGATGAAAAACACTCCTGCTGCTGTGGATGCCTATCGTCGGGCAGTAGATATAGACCCACGTGATTATCGTGCTTGGTATGGACTAGGACAGGCTTATGAGATGATGGGCATGCCTTTCTATGCGCTTCATTACTTCAAAAAATCTGTATTCTTGCAGCCAAATGATTCTCGTTTGTGGATTGCAATGGCTCAGTGTTATGAAACTGATCAACTTCGCATGCTTGATGAAGCAATAAAGTGTTACAGAAGGGCAGCAAACTGTAATGACAGGGAAGCAATTGCTCTGCACAACTTGGCAAAACTTCACTCGGAGCTAGGGCGCCCTGAAGAGGCTGCATTTTACTACAAAAAGGACTTAGAGAGGATGGAATCTGAAGAAAGGGAAGGACCTAAAATGGTTGAGGCTTTACTCTATCTTGCAAAATATTACAGAGCACAAAAAAAATTTGAAGATGCTGAAGTTTACTGTACACGTCTTCTGGATTATACTGGCCCGGAGAGAGAAACAGCAAAGAGTATACTTAGAGGAATGCGATCAACGCAATCTAATTTTCCTTCCATGGATGTTGAGCATTTTCCTCCCTAA
>Glyma11g02890.1 sequence type=predicted peptide gene model=Glyma11g02890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSKESCRSELRIAIRQLSDRCLYSASKWAAEQLVGIEQDPAKFTPSNTRFQRGSSSIRRKYKTHEITGTPIAGVSYVATPAMEEDELVDGDFYLLAKSYFDCREYKRAAHVLRDQNGRKSVFLRCHALYLAGEKRKEEEMIELEGPLGKSDAVNHELVSLERELSTFRKNGKVDPFCLYLYGLVLKQKGSENLARAVLVESVNSYPWNWNAWTELQSLCKTVDILNSLNLNSHWMKDFFLASVYQELRMHNDSLSKYEYLLGTFSNSNYVQAQIAKAQYSLREFDQVEAIFEELLSNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNFLSAWTLMGHEFVEMKNTPAAVDAYRRAVDIDPRDYRAWYGLGQAYEMMGMPFYALHYFKKSVFLQPNDSRLWIAMAQCYETDQLRMLDEAIKCYRRAANCNDREAIALHNLAKLHSELGRPEEAAFYYKKDLERMESEEREGPKMVEALLYLAKYYRAQKKFEDAEVYCTRLLDYTGPERETAKSILRGMRSTQSNFPSMDVEHFPP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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