Glyma11g02800 - SoyBase

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Report for Sequence Feature Glyma11g02800

Feature Type:	gene_model
Chromosome:	Gm11
Start:	1807904
stop:	1809532
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g02800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11660	AT	Annotation by Michelle Graham. TAIR10: winged-helix DNA-binding transcription factor family protein \| chr4:7043006-7044227 FORWARD LENGTH=377	SoyBase	E_val: 8.00E-97	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR10015	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PTHR10015:SF7	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PF00447	PFAM	HSF-type DNA-binding	JGI		ISS
UniRef100_I1LGH5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LGH5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q43455	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock transcription factor 29 (Fragment) n=3 Tax=Glycine max RepID=Q43455_SOYBN	SoyBase	E_val: 3.00E-157	ISS

Expression Patterns of Glyma11g02800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g02800

Paralog	Evidence	Comments
Glyma01g42640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g02800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g025700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g02800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g02800

Limit To All Plant Sequences

>Glyma11g02800.1   sequence type=CDS   gene model=Glyma11g02800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCGTTACCGGCGGAGCAAACCGGTGAATCAGCGCCGACGGAGTTGCAGAGATCCATTCCGACGCCGTTTCTGACCAAGACGTACCAGCTCGTCGATGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGACGGCACCAGCTTCATTGTATGGCGACCCGCGGAATTTGCAAGGGATTTGCTTCCTAAGTACTTCAAACACAACAACTTTTCCAGTTTCGTCCGTCAACTTAACACCTATGGGTTCCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCCAACGACTGTTTCCGGCGAGGCGAGAGAGCTCTTCTTCGCGACATACAGCGCCGGAAATTACTGCCGGTTCCGCCTGCAGCCGCGGCACCGGCAGCAGTCACAGCCAATACGGTGACGGTGGCTGTGGCAGCACCGGCGGTGAGAACTGTGTCTCCAACGACTTCCGGCGACGAACAGGTACTATCTTCGAACTCATCTCCGATTGCTGGGAATAATAATAATAATACAGTACACCGCACCACAAGTTGCACCACTGCGCCCGAGCTGTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATACAACTGAGTAACGAGTTGAGTCAATTGAAGGGTTTGTGTAATAACATACTCTCTTTGATGACCAATTATGCTTCTGGTTTTAGCCGCCAGCAGTTAGAATCCTCCACAAGCGCTGTGAGGACCGTGCCGGTGCCGGACGGGAAGGCGCCGCTGGAGCTTTTGCCCGCGAAACATGTTTCATCGGCTGATGACGCCCTGCATGTCGGTGGCGCCGCCGGTGCCGCGGCGTGCGCGACGGGGAACGCGGCGGAAGCAGAGGTTCCGAAGCTGTTTGGGGTTTCGATTGGACTGAAACGATGTAGGACAGAGTGCGAGGCCGAACCAGAAGGAGAAGATCAGAATCAGATGCAAACGCGAGCACAAACACAATCACAATCGTCGCAAGAACCAGATCACGGTTCAGATGTGAAATCTGAACCGCTTGATGGTGATGATTCGGATTATCAGGATCATGACCCTCATTGGTTGGAGCTATAG

Predicted protein sequences of Glyma11g02800

Limit To All Plant Sequences

>Glyma11g02800.1   sequence type=predicted peptide   gene model=Glyma11g02800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPLPAEQTGESAPTELQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERALLRDIQRRKLLPVPPAAAAPAAVTANTVTVAVAAPAVRTVSPTTSGDEQVLSSNSSPIAGNNNNNTVHRTTSCTTAPELLEENERLRKENIQLSNELSQLKGLCNNILSLMTNYASGFSRQQLESSTSAVRTVPVPDGKAPLELLPAKHVSSADDALHVGGAAGAAACATGNAAEAEVPKLFGVSIGLKRCRTECEAEPEGEDQNQMQTRAQTQSQSSQEPDHGSDVKSEPLDGDDSDYQDHDPHWLEL*

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