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Report for Sequence Feature Glyma11g02620

Feature Type:gene_model
Chromosome:Gm11
Start:1717197
stop:1719094
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63460AT Annotation by Michelle Graham. TAIR10: glutathione peroxidase 8 | chr1:23535118-23536326 FORWARD LENGTH=167 SoyBaseE_val: 2.00E-94ISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004601GO-mf Annotation by Michelle Graham. GO Molecular Function: peroxidase activity SoyBaseN/AISS
GO:0004602GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione peroxidase activity SoyBaseN/AISS
KOG1651 KOG Glutathione peroxidase JGI ISS
PTHR11592Panther GLUTATHIONE PEROXIDASE JGI ISS
PF00255PFAM Glutathione peroxidase JGI ISS
UniRef100_C6T333UniRef Annotation by Michelle Graham. Best UniRef hit: Glutathione peroxidase n=1 Tax=Glycine max RepID=C6T333_SOYBN SoyBaseE_val: 1.00E-117ISS
UniRef100_C6T333UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutathione peroxidase n=1 Tax=Glycine max RepID=C6T333_SOYBN SoyBaseE_val: 1.00E-117ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g02620 not represented in the dataset

Glyma11g02620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g024000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g02620.1   sequence type=CDS   gene model=Glyma11g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCACCAAGGATCCAAAATCCGTGTACGACTTTGTTGTCAAGGATGCTAAGGGAGATGATGTAGATCTCTCCTTTTACAAGGGAAAAGTCCTTCTGATTGTCAATGTTGCTTCTCAATGCGGCTTGACCAACTCCAATTATACGGAGCTGAATCAATTGTATGACAAGTATAAAGACCAAGGCCTGGAGATTCTGGCATTTCCATGTAATCAATTTGGTAAGCAAGAACCAGAAAGCAATGATAAAATTGTGGATTTTGTCTGCAGTCGCTTCAAATCTGAATTCCCCATCTTTGATAAGATTGAAGTGAATGGGGACAATTCTGCTCCTTTGTACAAATTCTTGAAGTTGGGGAAATGGGGAATTTTTGGTGATGATATTCAGTGGAACTTTTCCAAGTTTGTGGTTGATAAGAATGGACAAGTAGTGGGTCGCTATTATCCCACCACTTCTCCTCTCAGCCTTGAGCGAGACATTCACCAGCTTCTGGGTATTTCTTGA

>Glyma11g02620.1   sequence type=predicted peptide   gene model=Glyma11g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTKDPKSVYDFVVKDAKGDDVDLSFYKGKVLLIVNVASQCGLTNSNYTELNQLYDKYKDQGLEILAFPCNQFGKQEPESNDKIVDFVCSRFKSEFPIFDKIEVNGDNSAPLYKFLKLGKWGIFGDDIQWNFSKFVVDKNGQVVGRYYPTTSPLSLERDIHQLLGIS*







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