SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63490 | AT | Annotation by Michelle Graham. TAIR10: transcription factor jumonji (jmjC) domain-containing protein | chr1:23544938-23551946 REVERSE LENGTH=1116 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016706 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | SoyBase | N/A | ISS |
| PTHR10694 | Panther | JUMONJI DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PTHR10694:SF8 | Panther | RETINOBLASTOMA BINDING PROTEIN-RELATED | JGI | ISS | |
| PF00628 | PFAM | PHD-finger | JGI | ISS | |
| PF01388 | PFAM | ARID/BRIGHT DNA binding domain | JGI | ISS | |
| PF02373 | PFAM | JmjC domain | JGI | ISS | |
| PF02375 | PFAM | jmjN domain | JGI | ISS | |
| PF02928 | PFAM | C5HC2 zinc finger | JGI | ISS | |
| PF08429 | PFAM | PLU-1-like protein | JGI | ISS | |
| UniRef100_G7KC35 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lysine-specific demethylase 5D n=1 Tax=Medicago truncatula RepID=G7KC35_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C864 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C864 related cluster n=1 Tax=unknown RepID=UPI000233C864 | SoyBase | E_val: 0 | ISS |
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Glyma11g02580 not represented in the dataset |
Glyma11g02580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g42890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g023700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g02580.4 sequence type=CDS gene model=Glyma11g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAAGGAAAACCTAGGGCTGTTGAGAAAGGTGTGGTAGGACCTAGTTTGAGTGTTTCATCCTCGACTATACCTTCGGGGCCTGTGTATTACCCCACTGAGGATGAATTCAAGGATCCTTTGGAGTATATTTACAAGATTAGACCCGAGGCTGAACCTTTTGGGATTTGTAAGATTGTGCCTCCAAAGACTTGGAAACCCCCTTTTGCTTTGGATCTAGACACTTTTACTTTCCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCTCGCCCTGCCGCCTGTGACTCCAAGACATTTGACTTGGACTACTCCAGGTTTCTGAGGGACCACTCTGGTAAGAAGTCCAGGAAGAGGGTTGTGTTTGAGGGCGAGGAGCTCGACTTGTGTATGCTATTCAATGCCGTGAAACGGTTTGGCGGATATGATAAGGTTGTTGATGGGAAGAAATGGGGGGATGTTGCTCGCTTTGTGAGGTCCAGCGGGAAGATTTCGGATTGTGCTAAGCATGTGTTGTGTCAGTTGTACCGGGAGCATTTGTGTGATTATGAGAATTTTTATAACCGGATGAATCAAGGGACGGCTCAGAGTTGTAAGAAAGCTGTGCATGATGACCACAAGAGTGATCATGGGGTGCAATCTGTGGTATCCAAGAAGAATCACAAGAGTGTTGATGGTTCAAACCATAAGGATAGTAAGGTGCAAGAAGAAGAGCATGATCAGATTTGTGAGCAATGTAAAAGTGGTTTGCATGGGGAACTCATGCTATTGTGTGACAGGTGTGATAAGGGTTGGCATACATATTGTCTTTCCCCGCCATTGGAGAAAATTCCTCCAGGAAATTGGTATTGTTTCAACTGCTTGAATTCTGACAGGGACAGTTTTGGTTTTGTGCCTGGGAAGCATTACACATTGGAAGCTTTTAGACGCATAGCGGATCGGTCAAGGAGGAGATGGTTTGGATCAGGACCTGTTTCAAGGGTGCAAATTGAGAAGAAATTTTGGGATATTGTGGAGGGATTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTCTATGGGAGTGGTTTCCCACGTGTAACTGATCAGAAACCAAAATCAATTGATGACAAATTATGGGAAGAATACTCAACTAACCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCATAATATCACTGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTTCACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAAGCCACTGCTTTTGAGAAGGTGATGAAAAGCAGTCTTCCTGATCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACTATGCTAAACCCATCTGTCTTGCAAGAAAACGGAGTTCCTGTCTATAGCATACTTCAGGAGCCTGGGAATTTTGTTATTACCTTCCCTAGATCTTATCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCCGACTGGCTACCATATGGTGCTTTTGGAGCTGATCTGTATCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTGGTAGCCCAGTATGGTGATGTTGATGGCAGAGTGTCTTCTTATTTGAAGAAGGAAATGTTGAGAATATCAGATAAAGAAAAATCTTGGAGAGAGAAACTTTGGAAAAATGGTATTATTAAATCTTCTCGCATGGGTCCTCGAAAATGTCCCCAATATGTGGGAACTGAAGAAGATCCATCATGCCTTATATGCCAGCAATATCTCTATCTCTCTGCTGTTGTATGTGGTTGCAGGCCATCGACTTTTGTTTGTCTGGAGCACTGGGAACACCTCTGTGAGTGCAAAACTGTAAAACTACGTCTTCTCTATCGGCATTCACTTGCAGAATTATATGACTTGGCATTTTCTATGGACAAATATACTTCTGAGGACAAAGCTGAGTGTAGTAGTGTGAAAAGGAAGCCTTCATGTCTTAGTGCATTGACCAAAAAGGTGAAAGGTGGCTCCATTACTTTTGCTCAACTTGCTACAGAGTGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTTTGCATGATGCATTTGTTACTGCACTAAGAAAAGCTGAACAATTTCTTTGGGCCGGTTCTGAGATGGATTCTGTTCGAGACATGGTAAAGAATTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGACTGTGCAACAAAAATTGAGTTATGGTTGTGTCATCAAGACTTTAATGTCAAGAAAGTTCATTTGGAATTCGTTGATGAGTTACTGAAGTTTAGTCCTGCACCATGCAATGAACCTCTTTATCATAAATTGAAGGACTACGCAGAGGAAGCAAGGTTGTTAATTCAGGAGATTGATACTGCTTTGTCAATGTGTTCAAATATGTCTGAGTTGGAACTTTTATACTCCAAAGCTTGTGGCTTACCCATCTATGTGAAAGAAAGTAAGAAATTGGAAGGGAAAATTTCTTCAACCAAGGCATGGCTGGATAACGTCAGAAAGTGCATCTCAGCAAGACAACCTGCTGCACTACATGTTGATGTTCTTTACAAGCTAAAAGCAGAGTTTGTGGATCTTCAAGTTCAACTCCTGGAGATAGACGTGCTCCAGAATCTATTAAGTCAAGTGGAATCTTGTAGTGCTCAATGTCATGATATGTTAGAAGGTCATATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACGGTTTCGCAGTTGATGTACCAGAGCTCAAGCTTCTAAGGCAATACCATTCAGATGCTGTTTCATGGGTTTCTCACTTCAATGATGTTTTAGGGAGAGTTCAGATGCAGGAAGATCAAAATAATGCAGTTGATGAATTGAAGAGCATTTTTGAAGAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGGGAAAAGGCTGTGAAGGCACATGATTTGAAGATGCCTTTAGAATTCATTCAGCAACTGTTGAAGGAGTCCACTATGCTTCAAATTGAGGGAGAGAAACAATTTGTCAATTTATCTTGTGTGCTTGCTGTTGCCATTCCTTGGGAGGAAAGGGCTAGAAAGATGCTTTCACACGAGGCTCCTATTTCAGACTTTGAGGACATGATCAGAGCTTCAGAAAATATATTTGGTATTCTTCCTTCACTTAATGATGTCAAGGATGCTTTATCCGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTACGTGTGCTTCAAATTCTGTGCGGAAAGTAGAGGACTTGCAGATGTTGGTTTCTCAATCGAAGCATATTAAAGTATCTTTGGAAGAAAGAGGGATGCTTGAATTAGTTTTGAAGAATTGCAGAATATGGGGGTATGAAGCATGTTCTGTACTAGATGATGCTCAATGCTTATTGGATAATTCTTTGCATGAAATAAACAGTGGTTTAACTTGTAAAGTGGAAGATTTGATTGCAAGAATCCAATCTGCCATAGCATCTGGTGTATCACTTGGTTTTGACTTCAATGAGATTTCAAAACTCCAAGCATCGTATTCTACACTGCAATGGTGCAAAAGAGCCTTGTCTTTCTGCAATTGCTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTATCTGGTGCTCTGTTGAAAGTATTGATTGATGGGTTTGAATGGCTTAGGAAAGCATTAGAGGGGATTTCTGGACCTCGCAGTTCTAGAAGATGTAAGTTGACTGACATACAAGATATTCTTACCGATTATCAGACTATTAATATGACCTTTACAGCAGTAAAATGTCAACTTGAAGATGCCATTGGAAAACATAAGTTGTGGCAAGGGCAAGTGCATCAATTTTTTGGTCTAAGCTCTAGAGAACGTTCTTGGTCTTCAATATTGCAGCTCAAGGAACATGGAGATACCATTGCCTTTAGTTGCTCCGAACTGGATTTGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAATAGATGCATGGATAAATTTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGATCTGAAGGAACAAAACCTATGTATATGCTGCTATGATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAACTACAAGTGCCCTTATTGTGAAATTTTGAGGGGTGAATTCCATTATCAGAATGGAGGTGCCCTCCTGAGGTTTGTGAAGAAGCGTGTTGAATTGAAAGTTCTTACTGAACTCATGTCTCATGCTGAGCATTTCTGTTTATGGATTGATGAAAAAGATTTTTTGTGCCAACTTGTTGAGAAAGCCCTTTCATGCAAATCTTGCTTGAGAGAAATTGTGATCCTTGCATCAGCTAATGTTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAGCTGACTTTAGCAAAAAACTTTTGGAAAATTCAAGTCAGTAGATTGTTAAATGGTGTACCAAAGCCCACTATCCAACAAATTCAGAAGCATCTGAAGGAGGGACAGGCTATGGACATATCACCTGAAGATCACTATATGTTGAAACTTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAGGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTAGTGGAAGGTGAAAACTTGCCTGTTGATATGAACGAGGAACTAAGGACATTAAGGGCACGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCAGAAAGGATGATTGCATGTTATCATTGTAATGAGTGGTATCACTTTGATTGCATGAAATTGCCTTGCACAGAAGAGGTCTACATTTGTCCTGCATGTAACCCGTGTACAGAAGGATTGCCTTCAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCATCTCCGAGGCATTCAAATCCTAGAAAGAAACAGAAGAGAGATGTGCCCAGTCTCACTTGCAACATATTCGCTAGCAGGAATCAAGATAAGCTTAGGTATTCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGACGAGCAGCTAAGAAACGTGTTGAACTTCGAAGTCTTTCTCCATTTCTATGCATACAACGATAG
>Glyma11g02580.4 sequence type=predicted peptide gene model=Glyma11g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKGKPRAVEKGVVGPSLSVSSSTIPSGPVYYPTEDEFKDPLEYIYKIRPEAEPFGICKIVPPKTWKPPFALDLDTFTFPTKTQAIHKLQARPAACDSKTFDLDYSRFLRDHSGKKSRKRVVFEGEELDLCMLFNAVKRFGGYDKVVDGKKWGDVARFVRSSGKISDCAKHVLCQLYREHLCDYENFYNRMNQGTAQSCKKAVHDDHKSDHGVQSVVSKKNHKSVDGSNHKDSKVQEEEHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLSPPLEKIPPGNWYCFNCLNSDRDSFGFVPGKHYTLEAFRRIADRSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVEVMYGNDLDTSVYGSGFPRVTDQKPKSIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQATAFEKVMKSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAQYGDVDGRVSSYLKKEMLRISDKEKSWREKLWKNGIIKSSRMGPRKCPQYVGTEEDPSCLICQQYLYLSAVVCGCRPSTFVCLEHWEHLCECKTVKLRLLYRHSLAELYDLAFSMDKYTSEDKAECSSVKRKPSCLSALTKKVKGGSITFAQLATEWLLQSSTILQNVFLHDAFVTALRKAEQFLWAGSEMDSVRDMVKNLIEAQKWAEGIRDCATKIELWLCHQDFNVKKVHLEFVDELLKFSPAPCNEPLYHKLKDYAEEARLLIQEIDTALSMCSNMSELELLYSKACGLPIYVKESKKLEGKISSTKAWLDNVRKCISARQPAALHVDVLYKLKAEFVDLQVQLLEIDVLQNLLSQVESCSAQCHDMLEGHMNLKNVGLLLKEWDGFAVDVPELKLLRQYHSDAVSWVSHFNDVLGRVQMQEDQNNAVDELKSIFEEGLSLKIQVDELPLVEIELKKANCREKAVKAHDLKMPLEFIQQLLKESTMLQIEGEKQFVNLSCVLAVAIPWEERARKMLSHEAPISDFEDMIRASENIFGILPSLNDVKDALSEANSWLRNSKPYLVSSTCASNSVRKVEDLQMLVSQSKHIKVSLEERGMLELVLKNCRIWGYEACSVLDDAQCLLDNSLHEINSGLTCKVEDLIARIQSAIASGVSLGFDFNEISKLQASYSTLQWCKRALSFCNCSPSLEDVLEVAEGLSHSSVSGALLKVLIDGFEWLRKALEGISGPRSSRRCKLTDIQDILTDYQTINMTFTAVKCQLEDAIGKHKLWQGQVHQFFGLSSRERSWSSILQLKEHGDTIAFSCSELDLILSEVEKVENWKNRCMDKFRMLVQNGNSLLHALEKINQTLDRSLFIYDKLQDLKEQNLCICCYDDSEDQEFLTCSTCMDCYHVRCVGLTEKDAGIENYKCPYCEILRGEFHYQNGGALLRFVKKRVELKVLTELMSHAEHFCLWIDEKDFLCQLVEKALSCKSCLREIVILASANVDEDISIVSEKLATAVKASKVAIVYDQHDTCDLELTLAKNFWKIQVSRLLNGVPKPTIQQIQKHLKEGQAMDISPEDHYMLKLTNVNCLGLQWAELAKKVATDSGALSLDKVFELVVEGENLPVDMNEELRTLRARCMLYCICRKPFDPERMIACYHCNEWYHFDCMKLPCTEEVYICPACNPCTEGLPSNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDVPSLTCNIFASRNQDKLRYSSGIECLRWQNRKPFRRAAKKRVELRSLSPFLCIQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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