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Report for Sequence Feature Glyma11g02570

Feature Type:gene_model
Chromosome:Gm11
Start:1683199
stop:1684902
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G23100AT Annotation by Michelle Graham. TAIR10: glutamate-cysteine ligase | chr4:12103779-12106751 REVERSE LENGTH=477 SoyBaseE_val: 2.00E-96ISS
GO:0002213GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to insect SoyBaseN/AISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006750GO-bp Annotation by Michelle Graham. GO Biological Process: glutathione biosynthetic process SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009700GO-bp Annotation by Michelle Graham. GO Biological Process: indole phytoalexin biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009816GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010193GO-bp Annotation by Michelle Graham. GO Biological Process: response to ozone SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0052544GO-bp Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition in cell wall SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0004357GO-mf Annotation by Michelle Graham. GO Molecular Function: glutamate-cysteine ligase activity SoyBaseN/AISS
PF04107PFAM Glutamate-cysteine ligase family 2(GCS2) JGI ISS
UniRef100_G7KC28UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutamate-cysteine ligase n=1 Tax=Medicago truncatula RepID=G7KC28_MEDTR SoyBaseE_val: 2.00E-107ISS
UniRef100_I1LGF5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LGF5_SOYBN SoyBaseE_val: 9.00E-153ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g02570 not represented in the dataset

Glyma11g02570 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g42900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g02570.2   sequence type=CDS   gene model=Glyma11g02570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGACAACATCATAGGACTAAAAAATGGCAAGCAAAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATCTCTATCAGGCTAAAACTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGATTAGGTTTTCAGCCTAAATGGAGACTGGAAGACATACCTGGAGTGCCTAAGGTACGGTATAACATTATGCAAAATCACTTACATAAATTTGGCCCACCTGCAATTGAATCATTGTTCATGACATGCTCAGTTCAGAATTTAAACCAGTTGGCAGCAGCCTTATTCGCTAATTCACCTTTCAAGGAAGGGGTTCCAAATGGTTATCTCACCATAAGAAGCCATAGGGTGGGTCAGATTCACAAACGCCGCGTTGGCATACTCCCCTTTGTTTTTTATGACACTTTTGGGTTTGAGCAGTATGTTGATTACGCTCTCGATGTGCCAATGTTGTTTGTTTATCGAAAAAAACAAGACTTCATGGCAAGTAAACTCCCTGCCATTCCTGGTCAGGTGCCAACACTTGGTGACTGGGAAAATCATCTAATAACTATATTTCCTGAGGTTACTAATCAACACTAA

>Glyma11g02570.2   sequence type=predicted peptide   gene model=Glyma11g02570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGDNIIGLKNGKQSISLEPGGQFELSGMPLKTLHQTCDEINSHLYQAKTVAEEMGIGFLGLGFQPKWRLEDIPGVPKVRYNIMQNHLHKFGPPAIESLFMTCSVQNLNQLAAALFANSPFKEGVPNGYLTIRSHRVGQIHKRRVGILPFVFYDTFGFEQYVDYALDVPMLFVYRKKQDFMASKLPAIPGQVPTLGDWENHLITIFPEVTNQH*







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